Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NYR93_RS04735 Genome accession   NZ_CP103769
Coordinates   936446..937054 (-) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus velezensis strain ML61     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 931446..942054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR93_RS04715 (NYR93_04715) dnaD 931682..932380 (+) 699 WP_003153516.1 DNA replication protein DnaD -
  NYR93_RS04720 (NYR93_04720) nth 932399..933058 (+) 660 WP_003153517.1 endonuclease III -
  NYR93_RS04725 (NYR93_04725) - 933055..933546 (+) 492 WP_032857086.1 YpoC family protein -
  NYR93_RS04730 (NYR93_04730) - 933624..936407 (-) 2784 WP_044053364.1 PBP1A family penicillin-binding protein -
  NYR93_RS04735 (NYR93_04735) recU 936446..937054 (-) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  NYR93_RS04740 (NYR93_04740) - 937096..938058 (+) 963 WP_014418234.1 DUF2515 domain-containing protein -
  NYR93_RS04745 (NYR93_04745) sspM 938102..938206 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  NYR93_RS04750 (NYR93_04750) - 938412..938657 (+) 246 WP_264254895.1 DUF5446 family protein -
  NYR93_RS04755 (NYR93_04755) - 938703..939071 (+) 369 WP_003153529.1 YppE family protein -
  NYR93_RS04760 (NYR93_04760) - 939110..939292 (-) 183 WP_003153532.1 YppF family protein -
  NYR93_RS04765 (NYR93_04765) - 939479..939928 (+) 450 WP_264254897.1 YppG family protein -
  NYR93_RS04770 (NYR93_04770) - 939958..940371 (-) 414 WP_003153535.1 hypothetical protein -
  NYR93_RS04775 (NYR93_04775) - 940510..941016 (+) 507 WP_003153536.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=724618 NYR93_RS04735 WP_003153521.1 936446..937054(-) (recU) [Bacillus velezensis strain ML61]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=724618 NYR93_RS04735 WP_003153521.1 936446..937054(-) (recU) [Bacillus velezensis strain ML61]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATCGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGTAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896