Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   K5606_RS10505 Genome accession   NZ_AP024318
Coordinates   2136862..2137332 (+) Length   156 a.a.
NCBI ID   WP_221063059.1    Uniprot ID   -
Organism   Staphylococcus aureus strain S36     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2131862..2142332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5606_RS10485 (S36TP_19710) coaW 2132173..2132976 (+) 804 WP_000862732.1 type II pantothenate kinase -
  K5606_RS10490 (S36TP_19720) - 2133106..2133777 (-) 672 WP_000120549.1 DUF2750 domain-containing protein -
  K5606_RS10495 (S36TP_19730) - 2134176..2135369 (-) 1194 WP_000183714.1 hypothetical protein -
  K5606_RS10500 (S36TP_19740) - 2135369..2136553 (-) 1185 WP_001291508.1 M20 family metallopeptidase -
  K5606_RS10505 (S36TP_19750) luxS 2136862..2137332 (+) 471 WP_221063059.1 S-ribosylhomocysteine lyase Regulator
  K5606_RS10510 (S36TP_19760) - 2137484..2137834 (-) 351 WP_001024035.1 membrane protein -
  K5606_RS10515 (S36TP_19770) - 2137848..2139149 (-) 1302 WP_001242303.1 pyrimidine-nucleoside phosphorylase -
  K5606_RS10520 (S36TP_19780) deoC 2139429..2140091 (-) 663 WP_001083328.1 deoxyribose-phosphate aldolase -
  K5606_RS10525 (S36TP_19790) deoD 2140405..2141115 (+) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  K5606_RS10530 (S36TP_19800) - 2141236..2141679 (-) 444 WP_000070865.1 Dps family protein -
  K5606_RS10535 (S36TP_19810) - 2141879..2142292 (-) 414 WP_001123309.1 DUF393 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17485.70 Da        Isoelectric Point: 5.4567

>NTDB_id=72461 K5606_RS10505 WP_221063059.1 2136862..2137332(+) (luxS) [Staphylococcus aureus strain S36]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKAVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=72461 K5606_RS10505 WP_221063059.1 2136862..2137332(+) (luxS) [Staphylococcus aureus strain S36]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCAG
GATTGCATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGCCGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCAGCTTGTAATGAAGTACAATGTGGCTGGGCAGCTAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404