Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NYR93_RS03165 Genome accession   NZ_CP103769
Coordinates   605292..606059 (+) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain ML61     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 600292..611059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR93_RS03135 (NYR93_03135) - 600575..602707 (+) 2133 WP_003152972.1 HD family phosphohydrolase -
  NYR93_RS03140 (NYR93_03140) ybeY 602708..603181 (+) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  NYR93_RS03145 (NYR93_03145) - 603162..603536 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  NYR93_RS03150 (NYR93_03150) - 603660..604070 (+) 411 WP_236837019.1 cytidine deaminase -
  NYR93_RS03155 (NYR93_03155) era 604051..604956 (+) 906 WP_003152978.1 GTPase Era -
  NYR93_RS03160 (NYR93_03160) - 605112..605255 (+) 144 WP_007408286.1 YqzL family protein -
  NYR93_RS03165 (NYR93_03165) recO 605292..606059 (+) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  NYR93_RS03170 (NYR93_03170) glyQ 606361..607248 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  NYR93_RS03175 (NYR93_03175) glyS 607241..609280 (+) 2040 WP_014305438.1 glycine--tRNA ligase subunit beta -
  NYR93_RS03180 (NYR93_03180) ccpN 609381..610019 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  NYR93_RS03185 (NYR93_03185) - 610045..610857 (+) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=724607 NYR93_RS03165 WP_003152982.1 605292..606059(+) (recO) [Bacillus velezensis strain ML61]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=724607 NYR93_RS03165 WP_003152982.1 605292..606059(+) (recO) [Bacillus velezensis strain ML61]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACATTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894