Detailed information NTG0724600

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PY722_RS24625
• Genome accession: NZ_CP119006
• Coordinates: 4938127..4939119 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CE0021a
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4933127..4944119

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PY722_RS24605 (PY722_24605)	otnK	4933902..4935164 (+)	1263	WP_000590392.1	3-oxo-tetronate kinase	-
PY722_RS24610 (PY722_24610)	ygbL	4935161..4935799 (+)	639	WP_001278994.1	aldolase	-
PY722_RS24615 (PY722_24615)	ygbM	4935804..4936580 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
PY722_RS24620 (PY722_24620)	ygbN	4936669..4938033 (+)	1365	WP_213198635.1	GntP family transporter	-
PY722_RS24625 (PY722_24625)	rpoS	4938127..4939119 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PY722_RS24630 (PY722_24630)	nlpD	4939182..4940276 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
PY722_RS24635 (PY722_24635)	pcm	4940461..4941087 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PY722_RS24640 (PY722_24640)	surE	4941081..4941842 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PY722_RS24645 (PY722_24645)	truD	4941823..4942872 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
PY722_RS24650 (PY722_24650)	ispF	4942869..4943348 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PY722_RS24655 (PY722_24655)	ispD	4943348..4944058 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=724600 PY722_RS24625 WP_000081550.1 4938127..4939119(-) (rpoS) [Escherichia coli strain CE0021a]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=724600 PY722_RS24625 WP_000081550.1 4938127..4939119(-) (rpoS) [Escherichia coli strain CE0021a]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715