Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NYR93_RS02370 Genome accession   NZ_CP103769
Coordinates   456782..457534 (+) Length   250 a.a.
NCBI ID   WP_052586398.1    Uniprot ID   -
Organism   Bacillus velezensis strain ML61     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 451782..462534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR93_RS02355 (NYR93_02355) - 452005..452196 (-) 192 WP_003152639.1 hypothetical protein -
  NYR93_RS02360 (NYR93_02360) - 452649..455291 (+) 2643 WP_003152640.1 valine--tRNA ligase -
  NYR93_RS02365 (NYR93_02365) - 455350..456642 (+) 1293 WP_003152642.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NYR93_RS02370 (NYR93_02370) comC 456782..457534 (+) 753 WP_052586398.1 A24 family peptidase Machinery gene
  NYR93_RS02375 (NYR93_02375) - 457661..458662 (+) 1002 WP_003152644.1 SPOR domain-containing protein -
  NYR93_RS02380 (NYR93_02380) - 458803..459372 (+) 570 WP_032856929.1 nucleoside triphosphate pyrophosphatase -
  NYR93_RS02385 (NYR93_02385) radC 459404..460099 (+) 696 WP_003152646.1 DNA repair protein RadC -
  NYR93_RS02390 (NYR93_02390) mreB 460191..461204 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  NYR93_RS02395 (NYR93_02395) mreC 461235..462098 (+) 864 WP_003152649.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27053.67 Da        Isoelectric Point: 9.0703

>NTDB_id=724600 NYR93_RS02370 WP_052586398.1 456782..457534(+) (comC) [Bacillus velezensis strain ML61]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSSCSFCRLPLSWGELVPVVSYILQGGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGSLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=724600 NYR93_RS02370 WP_052586398.1 456782..457534(+) (comC) [Bacillus velezensis strain ML61]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATCCTGCAAGGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGAATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCGGTATACGGTATGTGCGCCGCAGCCCGGGGCAGTCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588