Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PY719_RS17630 Genome accession   NZ_CP119003
Coordinates   3624118..3624747 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain CE0026a     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3619118..3629747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY719_RS17615 (PY719_17615) helD 3619360..3621414 (-) 2055 WP_001774801.1 DNA helicase IV -
  PY719_RS17620 (PY719_17620) yccF 3621537..3621983 (+) 447 WP_001261235.1 YccF domain-containing protein -
  PY719_RS17625 (PY719_17625) yccS 3621993..3624155 (+) 2163 WP_001774800.1 YccS family putative transporter -
  PY719_RS17630 (PY719_17630) sxy/tfoX 3624118..3624747 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PY719_RS17635 (PY719_17635) sulA 3624966..3625475 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PY719_RS17640 (PY719_17640) ompA 3625832..3626884 (+) 1053 WP_001361736.1 porin OmpA -
  PY719_RS17645 (PY719_17645) matP 3626960..3627412 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PY719_RS17650 (PY719_17650) ycbZ 3627598..3629358 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=724504 PY719_RS17630 WP_000839153.1 3624118..3624747(-) (sxy/tfoX) [Escherichia coli strain CE0026a]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=724504 PY719_RS17630 WP_000839153.1 3624118..3624747(-) (sxy/tfoX) [Escherichia coli strain CE0026a]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1