Detailed information NTG0724476

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PY719_RS07995
• Genome accession: NZ_CP119003
• Coordinates: 1654900..1655892 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CE0026a
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1649900..1660892

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PY719_RS07965 (PY719_07965)	ispD	1649961..1650671 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PY719_RS07970 (PY719_07970)	ispF	1650671..1651150 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PY719_RS07975 (PY719_07975)	truD	1651147..1652196 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
PY719_RS07980 (PY719_07980)	surE	1652177..1652938 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PY719_RS07985 (PY719_07985)	pcm	1652932..1653558 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PY719_RS07990 (PY719_07990)	nlpD	1653743..1654837 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
PY719_RS07995 (PY719_07995)	rpoS	1654900..1655892 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PY719_RS08000 (PY719_08000)	ygbN	1655986..1657350 (-)	1365	WP_000104456.1	GntP family transporter	-
PY719_RS08005 (PY719_08005)	ygbM	1657439..1658215 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
PY719_RS08010 (PY719_08010)	ygbL	1658220..1658858 (-)	639	WP_001278994.1	aldolase	-
PY719_RS08015 (PY719_08015)	otnK	1658855..1660117 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=724476 PY719_RS07995 WP_000081550.1 1654900..1655892(+) (rpoS) [Escherichia coli strain CE0026a]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=724476 PY719_RS07995 WP_000081550.1 1654900..1655892(+) (rpoS) [Escherichia coli strain CE0026a]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715