Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PY720_RS19055 Genome accession   NZ_CP119000
Coordinates   4014300..4014929 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain CE0026f     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4009300..4019929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY720_RS19035 (PY720_19035) ycbZ 4009689..4011449 (-) 1761 WP_000156526.1 Lon protease family protein -
  PY720_RS19040 (PY720_19040) matP 4011635..4012087 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PY720_RS19045 (PY720_19045) ompA 4012163..4013215 (-) 1053 WP_001361736.1 porin OmpA -
  PY720_RS19050 (PY720_19050) sulA 4013572..4014081 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PY720_RS19055 (PY720_19055) sxy/tfoX 4014300..4014929 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PY720_RS19060 (PY720_19060) yccS 4014892..4017054 (-) 2163 WP_000875044.1 YccS family putative transporter -
  PY720_RS19065 (PY720_19065) yccF 4017064..4017510 (-) 447 WP_001261235.1 YccF domain-containing protein -
  PY720_RS19070 (PY720_19070) helD 4017633..4019687 (+) 2055 WP_000420537.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=724424 PY720_RS19055 WP_000839153.1 4014300..4014929(+) (sxy/tfoX) [Escherichia coli strain CE0026f]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=724424 PY720_RS19055 WP_000839153.1 4014300..4014929(+) (sxy/tfoX) [Escherichia coli strain CE0026f]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1