Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KU43P_RS23050 Genome accession   NZ_AP019365
Coordinates   5033037..5034404 (-) Length   455 a.a.
NCBI ID   WP_317659833.1    Uniprot ID   A0A5K7U2J1
Organism   Pseudomonas sp. KU43P     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5028037..5039404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU43P_RS23030 (KU43P_45420) - 5028287..5028484 (-) 198 WP_008094130.1 YbdD/YjiX family protein -
  KU43P_RS23035 (KU43P_45430) - 5028498..5030564 (-) 2067 WP_317659830.1 carbon starvation CstA family protein -
  KU43P_RS23040 (KU43P_45440) - 5030729..5031091 (+) 363 WP_317659831.1 PilZ domain-containing protein -
  KU43P_RS23045 (KU43P_45450) - 5031354..5032871 (+) 1518 WP_317659832.1 nucleobase:cation symporter-2 family protein -
  KU43P_RS23050 (KU43P_45460) radA 5033037..5034404 (-) 1368 WP_317659833.1 DNA repair protein RadA Machinery gene
  KU43P_RS23055 (KU43P_45470) mscL 5034582..5035001 (+) 420 WP_317659834.1 large-conductance mechanosensitive channel protein MscL -
  KU43P_RS23060 (KU43P_45480) - 5035031..5035807 (-) 777 WP_317659835.1 ferredoxin--NADP reductase -
  KU43P_RS23065 (KU43P_45490) - 5036015..5036722 (+) 708 WP_317659836.1 autoinducer binding domain-containing protein -
  KU43P_RS23070 (KU43P_45500) - 5036820..5037944 (+) 1125 WP_317659837.1 methyltransferase -
  KU43P_RS23075 (KU43P_45510) - 5038061..5038216 (-) 156 WP_081663495.1 DUF2474 domain-containing protein -
  KU43P_RS23080 (KU43P_45520) cydB 5038225..5039232 (-) 1008 WP_317659838.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48679.11 Da        Isoelectric Point: 6.8985

>NTDB_id=72437 KU43P_RS23050 WP_317659833.1 5033037..5034404(-) (radA) [Pseudomonas sp. KU43P]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESAGAAAPSGRSGWAGQQAQIKTLAEVSVEEIPRFTTSSSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIA
TARQEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAINELGVFGMTDRGLKEVSNPSAIFLNRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=72437 KU43P_RS23050 WP_317659833.1 5033037..5034404(-) (radA) [Pseudomonas sp. KU43P]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAATGCGGCGCGACCTTCCCCAAATGGGCCGGCCAGTGCGGCGAATG
CGGGGCCTGGAACACCTTGGTCGAGACCATGATCGAGAGCGCCGGTGCCGCGGCGCCCAGCGGGCGTTCGGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTCAGTGTCGAGGAAATCCCCCGCTTCACCACCAGCAGCTCGGAACTG
GACCGTGTGTTGGGCGGTGGGCTGGTCGATGGTTCGGTGGTGCTGATCGGTGGCGACCCCGGCATCGGCAAGTCGACCAT
CCTGTTGCAGACCCTGTGCAACATCGCCGTGGGCATGCCGGCGCTGTACGTCACCGGTGAGGAATCGCAACAGCAGGTGG
CGATGCGCTCGCGGCGCCTGGGCTTGCCCCAGGACCAGCTCAAGGTCATGACCGAAACCTGCATCGAAACCATCATCGCC
ACAGCCCGGCAGGAGAAGCCGCGGGTGATGGTCATCGACTCGATCCAGACCATCTTCACCGAGCAGCTGCAGTCGGCGCC
CGGTGGCGTGGCCCAGGTGCGCGAGAGTACGGCGTTGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCAATTTTCCTGG
TCGGCCATGTCACCAAGGAAGGCTCGCTGGCCGGCCCGCGGGTGCTGGAGCACATGGTCGACACCGTGCTTTATTTCGAA
GGCGAGTCCGATGGCCGTCTGCGTCTGTTGCGGGCGGTGAAGAACCGCTTCGGGGCGATCAACGAACTGGGCGTGTTCGG
CATGACCGATCGCGGTCTGAAGGAAGTCTCCAACCCCTCGGCGATCTTCCTCAACCGTGCCCAGGAAGAAGTGCCTGGCA
GCGTGGTCATGGCCACCTGGGAAGGCACTCGGCCGATGCTGGTCGAAGTGCAGGCGCTGGTCGATGACAGCCACCTGGCC
AACCCGCGGCGGGTCACCCTGGGCCTGGACCAGAACCGCTTGGCCATGCTGCTGGCGGTGCTGCATCGTCACGGTGGTAT
TCCCACCCATGACCAGGATGTATTCCTCAACGTGGTGGGGGGGGTGAAGGTGCTGGAGACTGCCTCCGACCTGGCCTTGC
TGGCGGCGGTAATGTCCAGTTTGCGCAACCGGCCGCTGGCCCATGGTTTGCTGGTGTTCGGTGAGATCGGCCTGTCGGGC
GAGGTGCGGCCGGTGCCGAGCGGGCAGGAACGTTTGAAGGAGGCGGCCAAGCATGGCTTCAAGCGGGCTATCGTACCCAA
GGGCAATGCGCCCAAAGAGCCGCCGGCGGGGTTGCAGGTGATTGCCGTGACCCGGCTGGAACAGGCATTGGATGCCTTGT
TCGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(354-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K7U2J1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.894

99.341

0.486
  radA Streptococcus pneumoniae Rx1

45.969

100

0.464
  radA Streptococcus pneumoniae R6

45.969

100

0.464
  radA Streptococcus pneumoniae TIGR4

45.969

100

0.464
  radA Streptococcus pneumoniae D39

45.969

100

0.464
  radA Streptococcus mitis SK321

46.154

100

0.462
  radA Streptococcus mitis NCTC 12261

45.934

100

0.459

Multiple sequence alignment