Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PY717_RS14295 Genome accession   NZ_CP118997
Coordinates   2939367..2939972 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain CE0032f     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2934367..2944972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY717_RS14275 (PY717_14275) aes 2934404..2935363 (+) 960 WP_000801846.1 acetyl esterase -
  PY717_RS14280 (PY717_14280) hemH 2935360..2936322 (-) 963 WP_001250088.1 ferrochelatase -
  PY717_RS14285 (PY717_14285) adk 2936558..2937202 (-) 645 WP_001220233.1 adenylate kinase -
  PY717_RS14290 (PY717_14290) htpG 2937383..2939257 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  PY717_RS14295 (PY717_14295) recR 2939367..2939972 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PY717_RS14300 (PY717_14300) ybaB 2939972..2940301 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PY717_RS14305 (PY717_14305) dnaX 2940354..2942285 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  PY717_RS14310 (PY717_14310) apt 2942414..2942965 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PY717_RS14315 (PY717_14315) ybaN 2943118..2943495 (-) 378 WP_001188905.1 DUF454 family protein -
  PY717_RS14320 (PY717_14320) priC 2943565..2944092 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  PY717_RS14325 (PY717_14325) rsmS 2944106..2944267 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  PY717_RS14330 (PY717_14330) - 2944320..2944418 (-) 99 Protein_2801 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=724311 PY717_RS14295 WP_001195025.1 2939367..2939972(-) (recR) [Escherichia coli strain CE0032f]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=724311 PY717_RS14295 WP_001195025.1 2939367..2939972(-) (recR) [Escherichia coli strain CE0032f]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443