Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   PYW37_RS11375 Genome accession   NZ_CP118969
Coordinates   2238219..2238989 (-) Length   256 a.a.
NCBI ID   WP_004254655.1    Uniprot ID   Q9CE51
Organism   Lactococcus lactis strain DSM 20481     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2233219..2243989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW37_RS11355 - 2234537..2234701 (+) 165 WP_025016827.1 hypothetical protein -
  PYW37_RS11360 - 2235148..2236329 (+) 1182 WP_025016828.1 site-specific integrase -
  PYW37_RS11365 - 2236541..2237167 (+) 627 WP_017865091.1 copper homeostasis protein CutC -
  PYW37_RS11370 - 2237207..2238226 (-) 1020 WP_004254656.1 ABC transporter permease -
  PYW37_RS11375 pptA 2238219..2238989 (-) 771 WP_004254655.1 ABC transporter ATP-binding protein Regulator
  PYW37_RS11380 - 2239008..2240813 (-) 1806 WP_025016829.1 glycerophosphodiester phosphodiesterase -
  PYW37_RS11385 - 2241092..2241493 (+) 402 WP_004254651.1 HIT family protein -
  PYW37_RS11390 - 2241506..2241727 (+) 222 WP_010906257.1 hypothetical protein -
  PYW37_RS11395 - 2241739..2242083 (-) 345 WP_004254648.1 hypothetical protein -
  PYW37_RS11400 rplA 2242162..2242851 (-) 690 WP_004254644.1 50S ribosomal protein L1 -
  PYW37_RS11405 rplK 2243189..2243614 (-) 426 WP_004254643.1 50S ribosomal protein L11 -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28472.99 Da        Isoelectric Point: 4.5320

>NTDB_id=724249 PYW37_RS11375 WP_004254655.1 2238219..2238989(-) (pptA) [Lactococcus lactis strain DSM 20481]
MLKVTNLTGGYLGHPVLKDLNFEIKEGELVGLIGLNGAGKSTTIQEIIGLLTPYSGQIELDGLTLQQDLEGYRRKIGFIP
ETPSLYEELTLREHIEVTALAYGISVDLAFERAEKLLETFRLSDKLDWFPVNFSKGMKQKVMIICAFLVEPSLYIVDEPF
MGLDPLAIQDLIDLMIDMKKSGSSILMSTHILSTAEKFCDKFIVLHEGQVVAFGTVEELRTQFNQPKASLDEIYLALTKG
NIPNSKEVVEAGKSNE

Nucleotide


Download         Length: 771 bp        

>NTDB_id=724249 PYW37_RS11375 WP_004254655.1 2238219..2238989(-) (pptA) [Lactococcus lactis strain DSM 20481]
ATGTTAAAAGTAACAAATCTAACAGGTGGCTATTTGGGGCATCCTGTCTTAAAAGACCTTAATTTTGAAATTAAAGAAGG
CGAGTTAGTTGGACTCATTGGTTTAAATGGTGCAGGAAAATCGACGACAATTCAAGAAATTATTGGACTTTTGACTCCTT
ATTCTGGACAAATTGAATTAGACGGCTTAACTTTACAACAAGATTTAGAAGGCTATCGTAGAAAAATTGGTTTCATTCCA
GAAACACCAAGTTTGTATGAAGAATTGACTTTGCGTGAACATATTGAAGTGACAGCTTTAGCTTACGGGATTTCTGTTGA
CTTGGCTTTTGAACGTGCTGAAAAATTATTAGAAACTTTCCGCTTGAGTGATAAATTAGATTGGTTCCCTGTGAATTTTT
CAAAAGGGATGAAACAAAAAGTGATGATTATCTGCGCATTCTTAGTGGAACCTTCGCTCTATATTGTTGATGAACCTTTT
ATGGGACTTGACCCGCTTGCGATTCAGGATTTGATTGACTTGATGATTGACATGAAAAAATCAGGAAGTTCGATTTTAAT
GAGTACACATATCTTGTCCACAGCTGAAAAATTCTGTGATAAATTTATTGTTTTGCATGAAGGTCAAGTTGTTGCTTTTG
GAACAGTAGAAGAATTGCGTACTCAATTTAATCAGCCTAAGGCAAGTTTAGATGAAATTTATCTTGCCTTAACAAAAGGA
AATATTCCAAACTCTAAAGAAGTTGTAGAGGCAGGAAAGTCAAATGAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CE51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

67.355

94.531

0.637
  pptA Streptococcus thermophilus LMD-9

66.942

94.531

0.633