Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   PYW37_RS10030 Genome accession   NZ_CP118969
Coordinates   2018026..2018667 (+) Length   213 a.a.
NCBI ID   WP_003131746.1    Uniprot ID   Q9CI22
Organism   Lactococcus lactis strain DSM 20481     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2013026..2023667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW37_RS10000 - 2014186..2014377 (-) 192 WP_003131739.1 DNA-directed RNA polymerase subunit beta -
  PYW37_RS10005 murA 2014377..2015663 (-) 1287 WP_025016910.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  PYW37_RS10010 - 2015757..2016536 (-) 780 WP_032943467.1 inositol monophosphatase family protein -
  PYW37_RS10015 - 2016502..2016783 (-) 282 WP_003131743.1 UPF0223 family protein -
  PYW37_RS10020 spx 2016875..2017261 (-) 387 WP_010905435.1 transcriptional regulator Spx -
  PYW37_RS10025 - 2017421..2017945 (-) 525 WP_023188934.1 DUF1273 domain-containing protein -
  PYW37_RS10030 recU 2018026..2018667 (+) 642 WP_003131746.1 Holliday junction resolvase RecU Machinery gene
  PYW37_RS10035 - 2018735..2020729 (+) 1995 WP_025016908.1 transglycosylase domain-containing protein -
  PYW37_RS10040 - 2020730..2021362 (+) 633 WP_003131748.1 MBL fold metallo-hydrolase -
  PYW37_RS10045 - 2021401..2022486 (-) 1086 WP_023188936.1 LysM peptidoglycan-binding domain-containing protein -
  PYW37_RS10050 cysK 2022704..2023636 (+) 933 WP_003131750.1 cysteine synthase A -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24369.13 Da        Isoelectric Point: 10.1344

>NTDB_id=724245 PYW37_RS10030 WP_003131746.1 2018026..2018667(+) (recU) [Lactococcus lactis strain DSM 20481]
MVNYPNGRSRAYSTVPKKKKSLTELSVTKKSTSKTKGMVAFGKRGMNFEAEINATNEYYLSRGLAVIHKKPTPIQIVKVD
YPQRSRAKITEAYFRQASTTDYSGVYKGHYIDFEAKETQQKTVFPLKNFHEHQIVHMSNVLAQGGIAFVLLHFARLNETY
LLPSSCLITFYYEKGGLKSIPLSHIRENGYKIETNHIPRIPYLEIVNKLCEVQ

Nucleotide


Download         Length: 642 bp        

>NTDB_id=724245 PYW37_RS10030 WP_003131746.1 2018026..2018667(+) (recU) [Lactococcus lactis strain DSM 20481]
ATGGTTAATTATCCTAATGGAAGGTCGCGAGCTTACAGCACTGTTCCTAAGAAAAAAAAATCACTGACAGAGCTGTCAGT
AACTAAAAAAAGCACTTCAAAAACCAAAGGGATGGTTGCCTTCGGGAAGCGGGGAATGAATTTTGAAGCTGAAATTAATG
CAACAAATGAGTATTATCTTTCTCGTGGACTTGCAGTTATCCACAAAAAGCCAACACCAATTCAAATCGTTAAAGTAGAT
TATCCACAAAGGAGTCGTGCAAAAATTACAGAAGCTTACTTCAGGCAAGCATCTACTACTGACTACTCTGGAGTCTATAA
AGGTCACTACATCGACTTTGAAGCAAAGGAAACACAGCAAAAAACTGTTTTCCCTCTAAAAAATTTCCATGAGCATCAAA
TTGTTCACATGAGTAATGTTCTCGCTCAAGGGGGAATTGCTTTTGTCCTCTTGCACTTTGCAAGGCTAAATGAAACATAT
CTTCTTCCATCTTCGTGTTTGATTACTTTTTATTACGAAAAAGGCGGTTTAAAGTCAATTCCGCTTTCTCATATTCGCGA
AAATGGCTATAAAATTGAAACGAACCACATTCCTAGAATTCCTTATCTAGAAATTGTGAATAAACTTTGTGAGGTACAGT
AA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(44-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CI22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

47.393

99.061

0.469