Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PYW37_RS08420 Genome accession   NZ_CP118969
Coordinates   1688730..1690397 (-) Length   555 a.a.
NCBI ID   WP_023189847.1    Uniprot ID   -
Organism   Lactococcus lactis strain DSM 20481     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1683730..1695397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW37_RS08395 - 1684147..1684527 (-) 381 WP_003131357.1 cell division protein FtsL -
  PYW37_RS08400 rsmH 1684685..1685638 (-) 954 WP_010905597.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  PYW37_RS08405 - 1685858..1686796 (-) 939 WP_025016680.1 DUF805 domain-containing protein -
  PYW37_RS08410 - 1686820..1687341 (-) 522 WP_003131354.1 DUF805 domain-containing protein -
  PYW37_RS08415 - 1687439..1688005 (-) 567 WP_025016681.1 TMEM175 family protein -
  PYW37_RS08420 recN 1688730..1690397 (-) 1668 WP_023189847.1 DNA repair protein RecN Machinery gene
  PYW37_RS08425 - 1690545..1690991 (-) 447 WP_023189848.1 transcription regulator -
  PYW37_RS08430 - 1690988..1691794 (-) 807 WP_015426159.1 TlyA family RNA methyltransferase -
  PYW37_RS08435 - 1691873..1692730 (-) 858 WP_023189850.1 polyprenyl synthetase family protein -
  PYW37_RS08440 - 1692812..1693969 (-) 1158 WP_023189851.1 glycerate kinase -
  PYW37_RS08445 - 1694115..1694354 (-) 240 WP_003131346.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62826.02 Da        Isoelectric Point: 4.6475

>NTDB_id=724239 PYW37_RS08420 WP_023189847.1 1688730..1690397(-) (recN) [Lactococcus lactis strain DSM 20481]
MLQEISIKNFAIIEEIHLSFESGMTILTGETGAGKSIIIDAMSLLLGGRASSDFVRHGANKAEIEGLFFFDKTPELKTVL
LELGFEEVDSEIILRREIFANGRSVCRINGQMVNLATLRQVGELLVDIHGQHDSQELMNPKSHLRLLDEFGDEAFDQIKN
NYKLKFENFKNLRQQLNLRQKNEQEFAQRIEILQFQAEEIEAAEINLEEDEQLVNRREKLNNIKNIADSLSSAYLALDDE
DNDYSSLNNIRTTMTELDKISNFDNDYQELADKTAESYYVLEEVANQIQRIMSDLEFNPAELLQIEDRIMTLTTLKKKYG
PELSDVMNYLEKVQLELSELTGSENDSENLENSVKVAQVQLIEASKKLNEARHKIAKEVEKDIKHELSELYMEKADFKVS
FEGAKFSANGNEHVEFFIQTNPGEGFKPLAKTASGGELSRLMLAIKSSFSRRENKTAIVFDEVDTGVSGRVAQAIANKIY
KIARHGQVLAISHLPQVVAIADRQFYIEKASTDDITTSTVRKLNAEERVNEIAKMLAGEDLTKEALAQAKRLLSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=724239 PYW37_RS08420 WP_023189847.1 1688730..1690397(-) (recN) [Lactococcus lactis strain DSM 20481]
ATGTTACAAGAGATTTCAATCAAAAATTTTGCAATTATTGAAGAAATTCATCTATCCTTTGAGAGCGGAATGACGATTTT
AACTGGGGAAACTGGTGCGGGAAAATCAATAATTATTGATGCAATGTCTTTATTATTAGGTGGCCGTGCTTCGAGTGATT
TTGTGCGACATGGGGCAAACAAAGCCGAAATAGAAGGTCTCTTTTTCTTTGATAAAACTCCAGAATTGAAGACGGTATTA
TTAGAACTTGGCTTTGAAGAAGTAGATTCTGAAATTATTTTAAGACGTGAGATTTTTGCTAATGGTCGTTCCGTTTGTCG
AATCAATGGTCAAATGGTTAATTTAGCTACGCTAAGACAAGTGGGTGAATTATTAGTTGATATTCATGGTCAACACGATA
GCCAAGAATTGATGAATCCGAAAAGCCATCTTCGTTTACTTGATGAATTTGGTGACGAAGCCTTTGATCAGATAAAAAAT
AATTACAAACTCAAATTTGAAAACTTCAAAAATTTGCGTCAACAGCTCAATTTACGACAAAAAAATGAGCAAGAATTTGC
TCAAAGAATTGAAATTCTTCAATTTCAGGCTGAAGAAATTGAAGCGGCGGAAATTAATCTTGAAGAAGATGAACAATTAG
TTAATCGCCGAGAAAAGTTAAATAATATTAAAAATATTGCTGATTCGCTTAGTAGTGCTTATCTAGCGCTTGATGATGAA
GATAATGATTATTCAAGTCTTAATAATATCCGAACAACAATGACAGAATTGGATAAAATTAGTAACTTTGATAATGACTA
TCAAGAACTTGCTGACAAGACAGCTGAAAGTTATTATGTATTAGAAGAAGTTGCTAATCAAATTCAAAGAATCATGAGTG
ATTTAGAATTTAATCCAGCTGAGCTTTTACAAATTGAAGACCGGATTATGACCTTGACCACTTTGAAGAAAAAATATGGC
CCAGAACTGTCCGATGTGATGAACTATTTAGAGAAAGTCCAACTTGAACTCTCAGAACTGACGGGTTCGGAAAATGACTC
AGAAAATCTAGAAAATTCAGTTAAAGTTGCACAAGTTCAACTCATTGAAGCAAGTAAAAAACTTAATGAAGCGCGCCATA
AAATTGCCAAAGAAGTTGAAAAAGATATTAAACACGAACTTTCTGAGCTTTATATGGAAAAAGCTGATTTCAAAGTTAGT
TTTGAAGGGGCAAAGTTTTCGGCAAACGGGAATGAGCATGTTGAATTTTTTATTCAAACCAATCCGGGAGAAGGATTTAA
ACCGCTGGCAAAAACAGCTTCGGGTGGTGAACTTTCACGTTTAATGCTCGCTATAAAATCAAGCTTTTCAAGACGTGAAA
ATAAAACAGCCATTGTTTTTGATGAGGTCGATACTGGTGTTTCTGGTCGTGTTGCTCAAGCGATTGCTAATAAAATATAT
AAAATTGCTAGACATGGGCAAGTTCTTGCAATTTCTCACCTTCCACAAGTTGTGGCCATTGCCGATAGACAATTTTATAT
TGAAAAAGCTTCAACCGATGACATTACTACTTCCACAGTTAGAAAATTAAACGCTGAAGAAAGAGTAAATGAAATTGCGA
AAATGCTTGCTGGTGAAGATTTAACTAAAGAAGCCTTAGCTCAGGCTAAACGTTTATTGAGCAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.182

100

0.445