Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   PYW37_RS03330 Genome accession   NZ_CP118969
Coordinates   635620..636291 (+) Length   223 a.a.
NCBI ID   WP_003132782.1    Uniprot ID   Q9CET7
Organism   Lactococcus lactis strain DSM 20481     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 630620..641291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW37_RS03305 - 631049..631408 (+) 360 WP_025016977.1 YxeA family protein -
  PYW37_RS03310 - 631439..631582 (+) 144 WP_014570691.1 hypothetical protein -
  PYW37_RS03315 - 631597..632376 (+) 780 WP_012898329.1 ABC transporter ATP-binding protein -
  PYW37_RS03320 - 632369..634372 (+) 2004 WP_025016976.1 ABC transporter permease -
  PYW37_RS03325 - 634553..635617 (+) 1065 WP_023188544.1 VanZ family protein -
  PYW37_RS03330 braR 635620..636291 (+) 672 WP_003132782.1 response regulator transcription factor Regulator
  PYW37_RS03335 - 636278..637153 (+) 876 WP_023188545.1 sensor histidine kinase -
  PYW37_RS03340 - 637156..638220 (+) 1065 WP_010906116.1 prephenate dehydrogenase -
  PYW37_RS03345 aroA 638341..639633 (+) 1293 WP_023188546.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  PYW37_RS03350 - 639657..640145 (+) 489 WP_023188547.1 shikimate kinase -
  PYW37_RS03355 pheA 640147..640986 (+) 840 WP_023188548.1 prephenate dehydratase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25510.44 Da        Isoelectric Point: 4.8093

>NTDB_id=724208 PYW37_RS03330 WP_003132782.1 635620..636291(+) (braR) [Lactococcus lactis strain DSM 20481]
MTKIFIVEDDEIIVKAIKIALEKEFQVRSVSNFRAVKQEIMEFEADLVLMDIGLPFYSGFYWTNELRKLSQIPIIFISSA
SDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIEKLEFAGYVLSENTLISTQEGEREEIELTSSENKIL
TLLFRGNGEVVTKEKILQELWQTDEFIDANTLNVKMTRLRKKLGEIGFDKHIMTKRGSGYALV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=724208 PYW37_RS03330 WP_003132782.1 635620..636291(+) (braR) [Lactococcus lactis strain DSM 20481]
ATGACTAAAATATTTATTGTAGAAGATGATGAAATTATTGTGAAAGCAATTAAGATTGCCTTAGAAAAAGAATTTCAAGT
CAGAAGTGTTTCCAATTTTCGAGCAGTAAAACAAGAAATTATGGAATTTGAAGCAGATTTAGTATTAATGGATATTGGGC
TACCATTTTATAGTGGTTTTTATTGGACAAATGAATTAAGAAAACTTTCCCAAATTCCTATTATCTTTATTTCTTCGGCA
TCGGATGATATGAATCAAGTAACCGCCATGAATCAAGGAGCTGATGATTTTGTAACTAAGCCATTTTCATTAGAAATTTT
AAATGCAAAAATAAAAGCTTTACTGCGCAGAAGTTATTCTTTTTCAGGGATTGAAAAGTTAGAATTTGCTGGTTATGTTT
TATCTGAAAATACTTTGATTTCAACTCAAGAAGGTGAACGCGAAGAAATTGAGCTAACAAGTTCTGAAAATAAAATTTTA
ACTCTTCTTTTTCGTGGAAATGGTGAAGTGGTGACCAAGGAAAAAATTCTACAAGAGTTGTGGCAAACAGATGAATTTAT
TGATGCAAATACTTTAAATGTAAAAATGACTCGTTTACGCAAAAAACTTGGTGAAATTGGCTTTGATAAGCATATTATGA
CAAAAAGAGGAAGTGGTTATGCTCTGGTTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-222)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CET7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.441

99.552

0.413