Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   PYW37_RS03005 Genome accession   NZ_CP118969
Coordinates   565837..567615 (-) Length   592 a.a.
NCBI ID   WP_023189053.1    Uniprot ID   -
Organism   Lactococcus lactis strain DSM 20481     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 560837..572615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW37_RS02985 - 560984..561928 (+) 945 WP_003130319.1 manganese-dependent inorganic pyrophosphatase -
  PYW37_RS02990 - 561928..562725 (+) 798 WP_023189056.1 DUF1803 domain-containing protein -
  PYW37_RS02995 pepT 562754..563995 (+) 1242 WP_025017175.1 peptidase T -
  PYW37_RS03000 yjeM 564323..565801 (+) 1479 WP_232238903.1 glutamate/gamma-aminobutyrate family transporter YjeM -
  PYW37_RS03005 recQ 565837..567615 (-) 1779 WP_023189053.1 DNA helicase RecQ Machinery gene
  PYW37_RS03010 adhP 567811..568833 (+) 1023 WP_012898368.1 alcohol dehydrogenase AdhP -
  PYW37_RS03015 - 568854..569114 (+) 261 WP_012898367.1 hypothetical protein -
  PYW37_RS03020 - 569193..570644 (-) 1452 WP_003130330.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  PYW37_RS03025 - 570854..572527 (+) 1674 WP_025017174.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 66881.82 Da        Isoelectric Point: 6.3316

>NTDB_id=724203 PYW37_RS03005 WP_023189053.1 565837..567615(-) (recQ) [Lactococcus lactis strain DSM 20481]
MNLEAKLKEIFGYDNFRNGQKQIIEQVLDGQATLGILPTGAGKSICYQLPALIQPGLTLVISPLISLMKDQVDQLNIAGI
PATFINSTLEDSESYQRMRQVENGEIKLLFVAPERFSLDYFNAFLQKLPIDLVAIDEAHCISQWGHDFRPSYVDFASHLQ
YLPTNPTVLALTATATPKVADDIQKLLSISPSHTIKTGFLRENLRFEVVKGMDKRTFLKNYLKNQESEAAGIIYASTRKE
VEEICEWLNHNHFKAVRYHAGLSEQERQINQELFLFDEVPIMVATNAFGMGINKPNVRFVIHYALPATIESYYQEAGRAG
RDGLESDAILLFSPNDLRIRNFLIEQGEGDEAHKEHEYEKLRQMQAYTSAETCLQRYILQYFGDEGEDCKKCSNCLDERE
LLDITIDAQKVLSCVVRMGERFGKTAVAQVLIGSKNKNIAKWNFESLSTFGIMKNHSQKTVGELIDFLSAESYLNITSGK
FPLLLISAQGLKVLKGQIKVYRKASLIIESKTKISHHFDEECFASIRALRLELAKEEGVPPFMIFSDSALKEMAQVLPDS
PSKFLQISGVGPVKLEKYGRLFIDKISEYKKS

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=724203 PYW37_RS03005 WP_023189053.1 565837..567615(-) (recQ) [Lactococcus lactis strain DSM 20481]
ATGAATTTAGAAGCTAAATTAAAAGAAATTTTTGGTTATGACAATTTCCGAAATGGTCAGAAACAAATTATTGAACAAGT
CCTAGATGGACAAGCCACTCTTGGTATTTTACCCACAGGAGCTGGAAAATCAATCTGCTATCAGTTACCAGCTCTTATTC
AACCAGGGCTTACTCTCGTAATCTCCCCACTTATTAGCTTGATGAAAGATCAAGTCGACCAGCTGAATATTGCCGGAATT
CCAGCAACATTTATTAACTCTACCTTAGAGGATTCCGAATCTTATCAAAGAATGCGACAGGTTGAAAATGGCGAAATCAA
GCTTCTTTTTGTAGCACCAGAGCGTTTTTCATTAGACTATTTCAATGCCTTTTTACAAAAACTTCCAATTGATTTAGTTG
CCATAGACGAAGCACACTGCATTTCACAATGGGGGCACGATTTCAGACCCAGTTATGTCGATTTTGCCTCTCATCTCCAA
TATTTACCAACAAATCCTACCGTCTTAGCCCTTACGGCTACTGCGACACCAAAAGTTGCAGATGATATTCAAAAACTTCT
TTCAATTTCCCCCAGTCATACTATTAAAACCGGTTTTCTTAGAGAAAACTTACGTTTTGAAGTAGTCAAAGGGATGGATA
AGAGAACTTTTCTTAAAAATTATCTTAAAAATCAAGAAAGTGAGGCTGCTGGAATTATCTATGCCAGCACTCGTAAAGAA
GTTGAAGAAATTTGTGAATGGCTCAACCATAATCATTTCAAAGCCGTTCGTTACCATGCTGGACTGAGCGAACAGGAACG
TCAAATAAATCAAGAACTTTTTCTCTTTGACGAAGTACCGATAATGGTTGCCACTAATGCTTTTGGCATGGGAATCAATA
AACCAAATGTTCGATTTGTGATTCATTATGCCCTTCCCGCAACAATTGAAAGTTATTATCAAGAAGCTGGGCGAGCAGGA
CGGGACGGGCTTGAATCTGATGCTATCCTCCTTTTTTCACCAAATGATTTACGAATTCGTAATTTCTTGATTGAGCAAGG
TGAAGGTGATGAAGCGCACAAGGAACATGAATACGAAAAGCTTCGACAAATGCAAGCATACACAAGTGCCGAAACCTGTT
TGCAACGCTATATCTTGCAATATTTTGGTGATGAAGGTGAAGATTGTAAAAAGTGTAGTAATTGTCTTGATGAAAGAGAA
CTTCTCGATATTACAATTGATGCTCAAAAAGTCCTATCTTGTGTCGTCCGAATGGGTGAACGTTTTGGTAAGACGGCCGT
AGCACAAGTTTTGATTGGTTCTAAAAATAAAAATATTGCAAAATGGAATTTTGAATCTCTATCGACTTTTGGAATTATGA
AAAACCATTCCCAAAAAACCGTGGGTGAATTAATCGATTTTCTATCTGCTGAAAGTTATTTAAACATTACATCAGGTAAA
TTCCCACTTCTCCTTATTTCAGCCCAAGGATTAAAAGTCCTCAAAGGACAAATCAAAGTTTATCGCAAAGCTAGCTTAAT
TATTGAATCGAAAACAAAAATCTCTCATCATTTTGATGAAGAATGTTTTGCAAGTATTCGTGCACTTCGACTTGAACTAG
CCAAGGAAGAAGGCGTCCCTCCTTTCATGATTTTTTCTGATAGTGCCCTTAAAGAAATGGCTCAAGTTCTGCCGGATAGT
CCAAGTAAATTTTTACAAATTTCTGGTGTCGGACCTGTTAAACTCGAAAAATATGGAAGGCTTTTTATCGACAAAATATC
TGAATATAAAAAAAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(19-179)

RQC domain (RQC)

(399-503)

Helicase conserved C-terminal domain (Helicase_C)

(214-322)

RecQ zinc-binding (RecQ_Zn_bind)

(335-396)

HRDC domain (HRDC)

(520-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

51.107

99.155

0.507