Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   PYW37_RS02225 Genome accession   NZ_CP118969
Coordinates   429813..430529 (-) Length   238 a.a.
NCBI ID   WP_003131538.1    Uniprot ID   Q9CID8
Organism   Lactococcus lactis strain DSM 20481     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 424813..435529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW37_RS02210 cdaA 426506..427384 (+) 879 WP_044009723.1 diadenylate cyclase CdaA -
  PYW37_RS02215 - 427374..428333 (+) 960 WP_025016546.1 CdaR family protein -
  PYW37_RS02220 glmM 428379..429737 (+) 1359 WP_003131539.1 phosphoglucosamine mutase -
  PYW37_RS02225 treR 429813..430529 (-) 717 WP_003131538.1 trehalose operon repressor Regulator
  PYW37_RS02230 - 430640..431125 (+) 486 WP_012897247.1 glucose PTS transporter subunit IIA -
  PYW37_RS02235 - 431262..432827 (+) 1566 WP_025016545.1 PTS transporter subunit EIIC -
  PYW37_RS02240 - 432895..435204 (+) 2310 WP_003131533.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27865.52 Da        Isoelectric Point: 6.4168

>NTDB_id=724197 PYW37_RS02225 WP_003131538.1 429813..430529(-) (treR) [Lactococcus lactis strain DSM 20481]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSANYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT
SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTY
DYLEDTLGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=724197 PYW37_RS02225 WP_003131538.1 429813..430529(-) (treR) [Lactococcus lactis strain DSM 20481]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC
AAGTGAAAATGAGCTCTCTGCTAATTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG
GGCTTATTCAAAGACGACATGGCTATGGTAGCATTGTCCTCGCTCACGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT
TCATACAAAGAACTACAAACCTCTATGGGTTTCCATAGTGAAACTGAGGTCATTCGATTTGAAAGACTTGAAATTAACCC
TAAACTTTCAGAAACAACTGGTTTTGCCGTTGGTGAACACGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAAT
TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCGAAGGTTTAACTCCAGAACATGCTAAAATTTCAACCTAT
GACTACTTAGAAGATACTCTAGGGCTTGATATTGCCTATGCTCAAAAGGAAGTCACGATTGATTTTGCCTGCGAAGATGA
CTTTAAATATCTTGACTTAAATCCCAAAGACCATCATGTCGTGTCTGTCAAATCTCATGTTTATCTTGCTGATAATACTC
TTTTTCAGTATACTGAATCTCGACATCAAGTCGACCGCTTTCGTTTCACAGAATTTGCCAGACGACAAAAAAGATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(89-228)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CID8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

46.414

99.58

0.462