Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   M5T43_RS17120 Genome accession   NZ_CP103690
Coordinates   3617942..3618565 (-) Length   207 a.a.
NCBI ID   WP_032726136.1    Uniprot ID   -
Organism   Klebsiella oxytoca strain ST34     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3612942..3623565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5T43_RS17105 (M5T43_17105) helD 3613178..3615232 (-) 2055 WP_016808043.1 DNA helicase IV -
  M5T43_RS17110 (M5T43_17110) - 3615355..3615801 (+) 447 WP_004100782.1 YccF domain-containing protein -
  M5T43_RS17115 (M5T43_17115) yccS 3615819..3617954 (+) 2136 WP_023320658.1 YccS family putative transporter -
  M5T43_RS17120 (M5T43_17120) sxy/tfoX 3617942..3618565 (-) 624 WP_032726136.1 TfoX/Sxy family DNA transformation protein Regulator
  M5T43_RS17125 (M5T43_17125) sulA 3619027..3619536 (+) 510 WP_032726007.1 SOS-induced cell division inhibitor SulA -
  M5T43_RS17130 (M5T43_17130) ompA 3619890..3620960 (+) 1071 WP_004100770.1 porin OmpA -
  M5T43_RS17135 (M5T43_17135) matP 3621071..3621523 (-) 453 WP_004100768.1 macrodomain Ter protein MatP -
  M5T43_RS17140 (M5T43_17140) - 3621709..3623466 (+) 1758 WP_016808048.1 AAA family ATPase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23674.68 Da        Isoelectric Point: 10.2095

>NTDB_id=724153 M5T43_RS17120 WP_032726136.1 3617942..3618565(-) (sxy/tfoX) [Klebsiella oxytoca strain ST34]
MKKLVCLRIHQFRACLSPLGKISCRPLFGGYSLAIDNTVFAMMAEGEIYLRVCEQSAQYRVAHKNPLLKMQKNGRLVALK
YYHIDEGLWRDSKMLFHLSALSLQTARNEKHRQRHSGRLKNLPNISFHMELQLINSGIKDELTLRKIGAKEAWLRLRKMN
KALTVNVLYSLEGAIAGVHAATLPTQQRQELEEWAAVQVQEMEGYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=724153 M5T43_RS17120 WP_032726136.1 3617942..3618565(-) (sxy/tfoX) [Klebsiella oxytoca strain ST34]
ATGAAGAAACTCGTATGTCTTAGGATCCATCAGTTTCGGGCATGTTTGTCTCCATTAGGAAAAATAAGCTGTCGGCCCTT
ATTTGGTGGCTATAGCCTGGCGATAGATAATACCGTGTTTGCCATGATGGCTGAGGGGGAGATCTATCTTCGGGTTTGTG
AGCAGAGTGCGCAGTATCGCGTGGCGCATAAAAACCCGCTGTTGAAGATGCAGAAGAATGGTCGTCTGGTTGCGCTTAAG
TACTATCATATAGATGAAGGGCTTTGGCGTGACAGCAAAATGCTTTTTCATTTATCAGCGCTATCATTACAGACCGCTCG
TAATGAAAAACATCGGCAGCGACATTCCGGAAGATTAAAGAATCTTCCAAATATTAGTTTTCACATGGAGCTCCAGTTGA
TTAATTCAGGTATCAAAGATGAATTAACGCTGCGAAAAATTGGCGCTAAAGAAGCCTGGCTCAGACTACGAAAAATGAAT
AAAGCGCTAACGGTAAACGTCCTTTATTCATTAGAGGGAGCTATTGCGGGCGTGCATGCGGCCACGCTCCCGACGCAACA
GCGTCAGGAGCTTGAGGAGTGGGCGGCGGTACAGGTACAGGAGATGGAGGGCTACTCAGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(15-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.308

94.203

0.493