Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   myaer102_RS30010 Genome accession   NZ_AP019314
Coordinates   5810751..5812277 (-) Length   508 a.a.
NCBI ID   WP_002796849.1    Uniprot ID   I4HQJ6
Organism   Microcystis viridis NIES-102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 5808202..5825832 5810751..5812277 within 0


Gene organization within MGE regions


Location: 5808202..5825832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  myaer102_RS29980 (myaer102_54780) - 5808202..5808660 (-) 459 WP_002799586.1 DUF29 domain-containing protein -
  myaer102_RS29985 (myaer102_54790) - 5808673..5809128 (-) 456 WP_012265410.1 DUF29 domain-containing protein -
  myaer102_RS29990 (myaer102_54800) - 5809141..5809596 (-) 456 WP_012265411.1 DUF29 domain-containing protein -
  myaer102_RS29995 (myaer102_54810) - 5809608..5810063 (-) 456 WP_002796852.1 DUF29 domain-containing protein -
  myaer102_RS30000 (myaer102_54820) - 5810076..5810531 (-) 456 WP_002796850.1 DUF29 domain-containing protein -
  myaer102_RS30005 petL 5810604..5810705 (-) 102 WP_002752397.1 cytochrome b6-f complex subunit PetL -
  myaer102_RS30010 (myaer102_54830) radA 5810751..5812277 (-) 1527 WP_002796849.1 DNA repair protein RadA Machinery gene
  myaer102_RS30015 (myaer102_54840) rpaB 5812511..5813239 (+) 729 WP_041804658.1 response regulator transcription factor RpaB -
  myaer102_RS30020 (myaer102_54850) - 5813249..5813890 (+) 642 WP_002796847.1 cofactor assembly of complex C subunit B -
  myaer102_RS30025 (myaer102_54860) - 5813981..5815138 (-) 1158 WP_012265412.1 IS630-like element ISMae23 family transposase -
  myaer102_RS30030 (myaer102_54880) - 5815582..5816795 (+) 1214 Protein_5670 ISL3-like element ISMae36 family transposase -
  myaer102_RS30035 (myaer102_54890) - 5817400..5818257 (-) 858 WP_125732955.1 IS5 family transposase -
  myaer102_RS30040 (myaer102_54900) - 5818516..5818809 (+) 294 WP_012265417.1 helix-turn-helix domain-containing protein -
  myaer102_RS30045 (myaer102_54910) - 5818961..5819713 (+) 753 Protein_5673 IS630-like element ISMae24 family transposase -
  myaer102_RS31820 - 5819739..5819857 (-) 119 Protein_5674 ISNCY family transposase -
  myaer102_RS30055 (myaer102_54930) - 5819967..5820953 (+) 987 WP_012265332.1 IS30-like element ISMae39 family transposase -
  myaer102_RS33980 (myaer102_54940) - 5820927..5821220 (-) 294 WP_080506955.1 ISAzo13-like element transposase-related protein -
  myaer102_RS33185 (myaer102_54950) - 5821165..5821545 (-) 381 WP_012265419.1 ISAzo13-like element transposase-related protein -
  myaer102_RS30070 (myaer102_54960) - 5821611..5822372 (+) 762 Protein_5678 IS630 family transposase -
  myaer102_RS30075 (myaer102_54980) - 5822464..5823531 (+) 1068 Protein_5679 ISKra4 family transposase -
  myaer102_RS30080 - 5823846..5824145 (+) 300 Protein_5680 transposase -
  myaer102_RS30085 (myaer102_54990) - 5824132..5824416 (-) 285 WP_041803987.1 ISAzo13-like element transposase-related protein -
  myaer102_RS30090 (myaer102_55000) - 5824618..5825832 (+) 1215 Protein_5682 ISL3-like element ISMae36 family transposase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54878.38 Da        Isoelectric Point: 4.9634

>NTDB_id=72415 myaer102_RS30010 WP_002796849.1 5810751..5812277(-) (radA) [Microcystis viridis NIES-102]
MAKSRTIYICSACGAESPQWLGKCPSCDTYGTLEEQVVAGGNNPAVNRPGWQNSRPNNGKGQRNPQPRISVRFSEITQYE
QERFPSGYGEFDRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVTNQLAQRLPRILYVSAEESGQQIKLRAARLGVGVVAVE
SENNGNGKEKKASESTAELDNHLYVLPETDLEEILRELESLRPQVAVIDSIQTLYFGALTSAPGSVAQVRECTSALMQVA
KRENITLLIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKNRFGATHEIGIFEMVDHGLVEVENPSELFL
GNRDEFSPGTATVVACEGTRPIVVELQALVSPTSYASPRRSTTGIEYNRLQQILAVLEKRVGIPLSKLDAYVASAGGLGV
EEPAADLGVAIAVVASFRDRVVDPRTVLIGEVGLGGQVRLVSQMELRLKEAAKLGFKRAIVPRGQVYPEDVGLEIVPVGK
VIEAIVAAIPPQQRFGEDIEDEEGEGQE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=72415 myaer102_RS30010 WP_002796849.1 5810751..5812277(-) (radA) [Microcystis viridis NIES-102]
ATGGCGAAATCGCGAACAATATATATCTGTAGTGCTTGTGGGGCGGAATCTCCCCAATGGTTGGGAAAATGCCCCAGTTG
TGACACCTACGGGACGCTAGAAGAACAAGTGGTAGCTGGTGGCAATAATCCGGCGGTAAATCGCCCAGGATGGCAAAATA
GTCGCCCAAATAACGGCAAAGGGCAACGCAACCCCCAGCCGCGCATCTCGGTTCGCTTCTCGGAAATTACCCAGTATGAA
CAGGAACGTTTTCCCTCCGGTTACGGGGAATTTGATCGCGTTCTCGGTGGTGGCATCGTCCCCGGTTCTCTTGTACTAAT
CGGCGGCGATCCGGGCATCGGCAAATCGACGCTTTTACTGCAAGTCACCAACCAACTCGCCCAAAGATTACCGCGCATCC
TCTACGTTTCCGCCGAAGAATCGGGACAACAGATTAAACTGCGGGCTGCCCGTTTGGGGGTGGGAGTGGTTGCCGTGGAG
TCGGAAAATAACGGCAATGGCAAGGAGAAAAAAGCCTCTGAATCAACCGCAGAACTCGATAATCATCTCTACGTTCTGCC
AGAAACAGATTTAGAGGAAATTTTGCGAGAATTAGAATCTCTACGCCCACAGGTGGCGGTAATTGACAGTATTCAAACTC
TTTATTTTGGGGCGTTAACTTCCGCACCGGGATCTGTCGCCCAAGTTCGCGAATGTACCTCCGCCTTGATGCAGGTGGCA
AAACGGGAGAATATTACTTTATTGATTGTCGGTCATGTTACTAAAGAAGGGGCGATCGCCGGTCCGCGAGTTTTGGAACA
TTTGGTCGATACGGTGTTATATTTTGAAGGCGATCGCTATGCCTCCCATCGTCTCTTAAGATCCGTGAAAAACCGTTTTG
GGGCAACCCATGAGATCGGTATTTTCGAGATGGTGGATCACGGTTTGGTGGAAGTGGAAAACCCCTCAGAATTGTTTTTA
GGCAATCGCGACGAATTTTCCCCTGGTACGGCGACGGTGGTAGCCTGTGAAGGTACACGCCCGATTGTGGTGGAGTTACA
GGCATTAGTTAGCCCCACCAGCTACGCTTCCCCGCGAAGATCGACCACGGGCATAGAATACAACCGATTACAGCAAATTC
TCGCCGTTTTAGAAAAGCGCGTCGGCATTCCTTTATCGAAATTAGATGCCTATGTTGCCTCCGCAGGAGGGTTGGGAGTG
GAAGAACCGGCGGCGGATCTGGGAGTTGCGATCGCTGTTGTCGCCAGTTTTCGCGATCGAGTCGTGGATCCGCGCACAGT
CTTAATCGGGGAAGTGGGATTAGGCGGACAAGTGCGCCTAGTGTCGCAAATGGAACTAAGATTAAAAGAAGCGGCTAAAT
TGGGCTTTAAACGGGCGATTGTCCCTAGAGGTCAAGTTTATCCCGAAGATGTGGGCTTAGAAATTGTTCCAGTCGGCAAG
GTAATCGAGGCAATTGTCGCCGCAATCCCCCCCCAGCAGCGCTTTGGGGAAGATATAGAAGACGAGGAAGGGGAAGGGCA
AGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(401-463)

KaiC (ATPase)

(85-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I4HQJ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.924

95.866

0.488
  radA Streptococcus mitis SK321

46.555

94.291

0.439
  radA Streptococcus pneumoniae D39

47.21

91.732

0.433
  radA Streptococcus pneumoniae TIGR4

47.21

91.732

0.433
  radA Streptococcus mitis NCTC 12261

47.21

91.732

0.433
  radA Streptococcus pneumoniae R6

47.21

91.732

0.433
  radA Streptococcus pneumoniae Rx1

47.21

91.732

0.433

Multiple sequence alignment