Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   myaer102_RS08730 Genome accession   NZ_AP019314
Coordinates   1714597..1717608 (-) Length   1003 a.a.
NCBI ID   WP_041804194.1    Uniprot ID   -
Organism   Microcystis viridis NIES-102     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1709597..1722608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  myaer102_RS08700 (myaer102_15930) uvrB 1709846..1711849 (-) 2004 WP_012266824.1 excinuclease ABC subunit UvrB -
  myaer102_RS08705 (myaer102_15940) - 1712041..1712532 (+) 492 WP_002795747.1 hypothetical protein -
  myaer102_RS08710 (myaer102_15950) - 1712613..1713365 (+) 753 WP_002795748.1 class I SAM-dependent methyltransferase -
  myaer102_RS08715 (myaer102_15960) - 1713421..1713807 (+) 387 WP_012266823.1 hypothetical protein -
  myaer102_RS08725 (myaer102_15970) - 1714186..1714584 (+) 399 WP_002760825.1 hypothetical protein -
  myaer102_RS08730 (myaer102_15980) pilL-C 1714597..1717608 (-) 3012 WP_041804194.1 hybrid sensor histidine kinase/response regulator Machinery gene
  myaer102_RS08735 (myaer102_15990) - 1717715..1718377 (+) 663 WP_002795753.1 class I SAM-dependent methyltransferase -
  myaer102_RS08745 (myaer102_16000) - 1718704..1719645 (+) 942 WP_012266819.1 homogentisate phytyltransferase -
  myaer102_RS08750 (myaer102_16010) - 1719642..1721888 (+) 2247 WP_125730633.1 hypothetical protein -
  myaer102_RS08755 (myaer102_16020) - 1722053..1722421 (+) 369 WP_002760814.1 2Fe-2S iron-sulfur cluster-binding protein -

Sequence

Protein


Download         Length: 1003 a.a.        Molecular weight: 110105.26 Da        Isoelectric Point: 4.4184

>NTDB_id=72401 myaer102_RS08730 WP_041804194.1 1714597..1717608(-) (pilL-C) [Microcystis viridis NIES-102]
MMKPDSDHLFNEDLEQLLESLEDKDADGDEALEELFGDSINWEESATNDLYSTPGPAPKLEPEDGDDLESLLLENAVVLD
SEAIIAIGNPNFYDSLEDLEAFLEKPTPPAQPPLPDIFESLEAFLWESPAVDWVAAVEPLKGLESLEIAPESLLEDEFKD
LEKLLEETNQVMAANPAASVSPPVGSKNLRPLVSKAFEQTMRVPIKQLDNLSNLIGELVVKRNRLEEEQDRLRLFLDNLL
TCVQHLGDVGSRMQDLYERSLLEGALLASRNSGGAIGYGRVQGENQGDSAMAGELDALEIDRFTDFHLLSQEMIELIVRV
RESASDLQFVVDETDQVTRSLRQATTQLQEGMTKSRMVPFSQAADRLPRAIRDISLKLDKQAKLKVEGGDVLIDKMLLEH
LNSPMTHLVNNAITHGIESPQERMAKGKPALGTISVRAFLQGNQTVITVGDDGAGIDADQVKRKAIEKGLIGDQEAEHLS
PQEVYKLLFHPGFSTKDQADDFAGRGVGLDVVQTSLIDVRGTVTIDSVLGKGSTFTIRLPLTLSICKALCCVSNHARIGF
SMDGVEDMKDFRSSDIQMDREGRRCVFWQNTLLPFQPLSELLSYNRQLSRGSFYTGKQEQDSFSIVILRGGNNLLAVQVD
QVIGELEIVIKQIEGPIPKTAGIAGATVLGDGTVMPIGDVLELIDIARGRLRTDNGGLWRQPAPPVGVETRQKSGAMVLI
VDDSITVRGLLSLSFSKAGYRVEQARDGQEAWEKLRGGLPCDIVFCDIEMPRMNGLELLYNLQKDPRLASIPVALLTSRG
AERHRQVAATLGASGYFTKPYTERDLLSAAERMIAGEVLLANSIKATRNQPLSPDATIIDSNPANFFAQSTPRVLIVDDS
VTAREMLAISLVKAGYRIEEARDGLEAWEKLRAGLACDLILCDLEMPRLNGLELLSRLQEDEQLQGIPVAMITSRGSQKM
QHLAAAKGAKGYFVKPYIEDVLLSAAQRLIAGEVLIQKDSPAD

Nucleotide


Download         Length: 3012 bp        

>NTDB_id=72401 myaer102_RS08730 WP_041804194.1 1714597..1717608(-) (pilL-C) [Microcystis viridis NIES-102]
ATGATGAAACCCGACTCGGATCATCTCTTTAACGAGGATCTCGAACAGCTGTTAGAGAGTTTAGAAGACAAAGACGCCGA
CGGTGACGAGGCTCTAGAGGAACTGTTTGGCGATAGTATCAATTGGGAAGAATCCGCCACTAATGATCTTTATTCTACCC
CCGGACCGGCTCCCAAGTTAGAACCGGAAGATGGGGATGATCTCGAATCTCTGCTGCTAGAAAACGCGGTGGTCCTGGAC
TCAGAAGCAATTATAGCCATCGGCAACCCCAATTTTTACGACAGCCTCGAAGACTTAGAAGCTTTTCTGGAAAAACCCAC
GCCACCGGCGCAACCGCCACTACCAGACATCTTTGAATCCCTAGAGGCCTTCCTCTGGGAATCCCCAGCAGTGGACTGGG
TGGCCGCGGTGGAACCTCTGAAAGGGTTAGAATCACTGGAAATTGCCCCAGAAAGCCTCCTAGAGGATGAATTCAAGGAT
TTAGAAAAACTCCTCGAAGAAACCAATCAGGTGATGGCAGCAAATCCGGCGGCCAGTGTCAGTCCGCCAGTCGGGTCAAA
AAACCTGCGTCCCCTTGTCAGTAAAGCTTTTGAACAGACGATGCGGGTGCCGATCAAACAATTGGATAACCTCAGCAATC
TGATCGGGGAACTGGTGGTTAAACGCAATCGCCTTGAAGAGGAACAGGATCGCCTGCGTCTCTTTTTAGATAATTTGCTA
ACCTGCGTCCAACATCTGGGTGATGTGGGCAGTCGGATGCAGGATCTCTATGAAAGAAGCCTCCTAGAAGGGGCTTTACT
GGCTAGTCGCAATTCCGGTGGTGCCATCGGTTACGGTAGAGTTCAGGGAGAAAATCAGGGGGATTCGGCCATGGCCGGCG
AACTAGATGCCCTAGAGATCGACCGTTTTACCGATTTCCATTTATTATCCCAAGAGATGATCGAATTGATCGTACGAGTG
CGAGAATCGGCCTCTGATCTTCAATTTGTCGTCGATGAAACCGATCAGGTGACGCGCAGTCTGCGACAGGCCACCACCCA
ACTACAGGAAGGGATGACCAAATCGCGCATGGTTCCCTTTAGTCAAGCCGCCGATCGCCTACCCCGGGCAATTCGCGATA
TTTCCCTGAAACTCGATAAACAAGCCAAATTAAAAGTGGAAGGGGGTGATGTTCTCATCGATAAGATGCTCCTCGAACAT
CTCAATAGTCCCATGACCCATCTGGTCAACAATGCGATCACCCACGGCATTGAATCACCCCAAGAACGCATGGCCAAAGG
GAAACCTGCCCTCGGTACCATCTCTGTCCGGGCATTCCTACAGGGGAATCAAACCGTGATCACCGTTGGTGATGATGGGG
CCGGTATTGATGCTGATCAGGTGAAACGCAAGGCGATCGAAAAAGGCCTGATCGGCGATCAGGAAGCTGAACACCTCAGT
CCCCAAGAAGTCTATAAACTCCTCTTTCACCCCGGTTTTAGTACCAAAGATCAGGCCGATGATTTTGCTGGTCGTGGGGT
GGGTTTAGATGTGGTGCAGACCAGTTTAATCGATGTGCGCGGGACCGTTACTATTGACTCGGTACTGGGCAAAGGAAGCA
CTTTTACCATCCGTTTACCCCTAACCCTGAGTATCTGTAAGGCCCTCTGTTGTGTTAGTAATCATGCGCGCATCGGGTTC
TCCATGGACGGAGTGGAAGATATGAAGGATTTCCGGTCCAGCGATATCCAAATGGATAGGGAGGGACGGCGCTGCGTTTT
CTGGCAAAATACTTTACTACCCTTCCAACCCTTGAGCGAATTGCTTTCCTACAATCGGCAACTAAGTCGCGGTAGTTTTT
ATACTGGCAAACAGGAGCAAGACTCTTTTTCGATCGTGATCCTGCGCGGTGGTAATAATCTCCTCGCAGTACAGGTGGAT
CAAGTGATCGGTGAACTGGAAATCGTCATCAAACAGATCGAAGGACCGATTCCGAAAACGGCTGGGATTGCTGGGGCGAC
GGTTTTGGGCGATGGTACGGTAATGCCGATCGGCGATGTGTTAGAGTTAATCGACATCGCCAGGGGTCGTCTGCGTACCG
ATAACGGTGGTCTTTGGCGCCAACCTGCCCCCCCCGTAGGGGTGGAAACTAGGCAAAAATCGGGGGCTATGGTTCTGATT
GTCGATGATTCGATTACTGTCCGGGGATTGCTCTCTTTAAGCTTTAGTAAAGCCGGTTATCGTGTGGAACAGGCCCGGGA
TGGTCAAGAAGCTTGGGAAAAATTACGCGGCGGTTTGCCCTGTGATATCGTTTTCTGCGATATCGAGATGCCCCGCATGA
ATGGCCTAGAATTACTGTATAATTTGCAAAAAGACCCCCGATTAGCGTCGATTCCCGTGGCTTTATTGACTTCCCGAGGA
GCGGAACGTCATCGTCAGGTGGCGGCGACATTAGGGGCCAGTGGTTATTTTACCAAGCCCTACACGGAAAGAGATTTACT
CTCGGCGGCTGAAAGAATGATTGCGGGGGAAGTGTTACTAGCTAATAGTATTAAAGCGACTCGTAATCAGCCTTTATCCC
CCGATGCAACGATTATTGACAGTAATCCCGCTAATTTCTTTGCACAATCGACTCCTCGGGTCTTGATTGTCGATGATTCG
GTAACGGCGCGGGAAATGTTAGCGATTTCTTTGGTGAAAGCTGGTTATCGCATTGAAGAGGCCCGAGACGGTTTAGAAGC
ATGGGAAAAATTACGGGCTGGATTAGCTTGTGATCTGATTCTCTGCGATCTCGAAATGCCTCGCCTGAATGGGTTAGAAT
TGCTCTCTCGTCTGCAAGAGGATGAACAACTTCAGGGGATACCAGTAGCGATGATTACCTCGCGAGGGTCGCAAAAAATG
CAGCATCTCGCCGCTGCTAAAGGGGCAAAAGGTTATTTTGTCAAGCCCTATATTGAGGATGTTTTACTGTCGGCAGCCCA
ACGTTTAATCGCTGGTGAGGTGTTAATCCAAAAAGACAGTCCCGCGGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(718-830)

Response regulator receiver domain (Response_reg)

(874-985)

CheW-like domain (CheW)

(549-685)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(405-542)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(199-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

66.589

85.942

0.572

Multiple sequence alignment