Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   M5S98_RS16125 Genome accession   NZ_CP103664
Coordinates   3318991..3319614 (-) Length   207 a.a.
NCBI ID   WP_058674523.1    Uniprot ID   -
Organism   Klebsiella aerogenes strain 4417     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3313991..3324614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5S98_RS16110 (M5S98_16110) helD 3314226..3316280 (-) 2055 WP_058674504.1 DNA helicase IV -
  M5S98_RS16115 (M5S98_16115) - 3316404..3316850 (+) 447 WP_020079238.1 YccF domain-containing protein -
  M5S98_RS16120 (M5S98_16120) yccS 3316868..3319003 (+) 2136 WP_020079239.1 YccS family putative transporter -
  M5S98_RS16125 (M5S98_16125) sxy/tfoX 3318991..3319614 (-) 624 WP_058674523.1 TfoX/Sxy family DNA transformation protein Regulator
  M5S98_RS16130 (M5S98_16130) sulA 3320064..3320573 (+) 510 WP_015367430.1 SOS-induced cell division inhibitor SulA -
  M5S98_RS16135 (M5S98_16135) ompA 3320926..3321978 (+) 1053 WP_080473199.1 porin OmpA -
  M5S98_RS16140 (M5S98_16140) matP 3322070..3322522 (-) 453 WP_015367432.1 macrodomain Ter protein MatP -
  M5S98_RS16145 (M5S98_16145) - 3322708..3324465 (+) 1758 WP_047037429.1 AAA family ATPase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23589.29 Da        Isoelectric Point: 10.0181

>NTDB_id=723972 M5S98_RS16125 WP_058674523.1 3318991..3319614(-) (sxy/tfoX) [Klebsiella aerogenes strain 4417]
MKKISKLRFLQFQECLSPLGKISSRPLFGGYSLAIENTVFAMVAEGEIYLRVCEQSASYRVENHSPMLMMRKNGRPVALK
YYRIDEALWQDSKMLFHLSQLSLHSARSEKQHQRDSGRLKNLPNISFHMELMLIHAGITDVKMLRTLGAEKSWLKLREHN
KGISINVLESLAGAIAGIHSAALPAQRRQELREWANTQGYSVEDYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=723972 M5S98_RS16125 WP_058674523.1 3318991..3319614(-) (sxy/tfoX) [Klebsiella aerogenes strain 4417]
ATGAAGAAAATTTCAAAATTACGGTTCCTCCAGTTTCAGGAGTGCCTTTCCCCCTTAGGTAAAATCAGTAGCCGGCCTTT
ATTCGGCGGGTATAGTCTGGCGATTGAAAATACCGTATTCGCCATGGTGGCTGAGGGCGAAATCTATCTTAGGGTTTGCG
AACAAAGCGCCTCTTATCGGGTTGAAAATCACAGCCCGATGCTGATGATGCGCAAGAATGGCCGGCCAGTGGCCTTAAAG
TATTACCGGATAGATGAAGCACTATGGCAGGACAGTAAAATGCTGTTTCACCTATCGCAGCTGTCATTGCATTCGGCGCG
AAGCGAAAAGCAGCATCAGCGTGATTCCGGCAGACTAAAGAATTTGCCTAATATCAGCTTCCATATGGAGTTGATGTTGA
TCCATGCCGGAATAACCGATGTGAAAATGCTGCGTACACTCGGGGCGGAAAAGAGCTGGTTAAAATTGAGAGAGCATAAT
AAAGGAATATCAATCAATGTCCTTGAGTCCCTGGCGGGCGCGATTGCCGGCATTCATTCCGCCGCGCTCCCGGCGCAGCG
GCGCCAGGAGCTACGGGAGTGGGCTAATACACAAGGATACAGCGTGGAGGATTATTCCGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

95.169

0.488