Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   myaer102_RS00545 Genome accession   NZ_AP019314
Coordinates   115187..116827 (-) Length   546 a.a.
NCBI ID   WP_125730158.1    Uniprot ID   A0A3G9JSV9
Organism   Microcystis viridis NIES-102     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 110187..121827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  myaer102_RS32920 - 110437..110568 (+) 132 WP_261779241.1 hypothetical protein -
  myaer102_RS00515 (myaer102_00930) - 110770..111591 (+) 822 WP_002796723.1 hypothetical protein -
  myaer102_RS00525 (myaer102_00940) - 112002..113198 (-) 1197 WP_002797825.1 DUF4377 domain-containing protein -
  myaer102_RS00530 (myaer102_00950) - 113462..113806 (+) 345 WP_012265540.1 YbaB/EbfC family nucleoid-associated protein -
  myaer102_RS00535 (myaer102_00960) - 113866..114588 (+) 723 WP_197533167.1 pyridoxine 5'-phosphate synthase -
  myaer102_RS00540 (myaer102_00970) - 114656..114967 (+) 312 WP_002797828.1 MgPME-cyclase complex family protein -
  myaer102_RS00545 (myaer102_00980) comA 115187..116827 (-) 1641 WP_125730158.1 DUF655 domain-containing protein Machinery gene
  myaer102_RS00550 (myaer102_00990) - 117056..119482 (+) 2427 WP_125730159.1 dynamin-like GTPase family protein -
  myaer102_RS00555 (myaer102_01000) - 119689..120549 (+) 861 WP_125730160.1 formylglycine-generating enzyme family protein -
  myaer102_RS00560 (myaer102_01010) - 120509..120904 (+) 396 WP_125730161.1 nucleotidyltransferase family protein -
  myaer102_RS00565 (myaer102_01020) - 121066..121641 (+) 576 WP_125730162.1 Uma2 family endonuclease -

Sequence

Protein


Download         Length: 546 a.a.        Molecular weight: 61472.07 Da        Isoelectric Point: 9.6232

>NTDB_id=72397 myaer102_RS00545 WP_125730158.1 115187..116827(-) (comA) [Microcystis viridis NIES-102]
MWAKMAIDKWRLKKIRTMGQLGFLLGTVFLLGGCHSLNAIQNRPQPLPQDQYIQVYFNYNQAQGSNYTDPYRQINRPGDN
LEQVIIDNINSAKSSIDLAVQELRLPAIAQALVARQQQGIKVRVILENIYNKPIHSLAKNQEKSSDREQERYQNLFDLVD
LNRDGKLSAEEIAQRDAITILKKAGIPLIDDRADRSKGSGLMHHKFMVIDNYTTLISSANYTLSDIHGDFSNTQTVGNAN
HLLVINNPPLARVFQQEFNLMWGREDRPKFGLDKPQRKPQKIPIGNSSLTVKFSPDSTAYPWAITSNGLIGETLNKAEKS
VNLALFVLTEQPLANILAQRHRKGIEIKALIDPSFAFRYYSEGLDLLGVALSNKCRYEPDNQPWQNPINTLGVTDLAPGD
KLHHKFGLIDDKIVITGSHNWSRAANHQNDEALVIIDNPTVAAHFDREFQYLYRTAKLGLPETIKNRIEQDRKNCPQSVT
IKSDRLINLNTATKEELDSLPGISGKLAEKIIAARQQKPFTSLEDLDRVSGIGQGKISKLKGKVSW

Nucleotide


Download         Length: 1641 bp        

>NTDB_id=72397 myaer102_RS00545 WP_125730158.1 115187..116827(-) (comA) [Microcystis viridis NIES-102]
ATGTGGGCAAAAATGGCAATAGATAAATGGAGATTAAAAAAAATTCGGACTATGGGACAGTTAGGATTTTTGTTAGGGAC
AGTTTTTCTTTTGGGTGGCTGTCATTCTTTGAATGCTATCCAAAATCGTCCGCAACCCTTGCCCCAAGATCAATATATTC
AAGTCTATTTTAATTATAATCAGGCCCAGGGGTCAAATTATACCGATCCCTATCGCCAAATTAATCGCCCGGGGGATAAT
TTAGAACAGGTTATTATTGATAATATCAACTCGGCCAAAAGTTCGATCGATCTAGCAGTGCAAGAGTTACGTTTACCCGC
CATTGCTCAAGCTTTAGTTGCTCGTCAGCAGCAGGGAATTAAAGTTAGGGTTATCCTCGAAAATATTTACAATAAACCTA
TTCATAGTTTAGCCAAAAACCAAGAAAAATCAAGCGATCGAGAACAGGAACGTTATCAAAACCTTTTTGACTTAGTTGAT
CTAAATCGAGATGGTAAATTAAGTGCGGAGGAAATCGCCCAAAGAGATGCAATTACTATCCTCAAAAAAGCTGGTATTCC
CCTAATTGATGATAGGGCAGATCGCTCAAAAGGTAGCGGTTTAATGCACCATAAATTCATGGTTATTGATAATTACACTA
CTTTAATCAGTTCAGCTAACTATACCTTAAGTGATATTCATGGAGACTTTTCTAATACCCAAACTGTCGGGAATGCCAAT
CACTTATTAGTCATTAATAATCCCCCACTAGCTAGAGTTTTTCAACAAGAATTTAATCTGATGTGGGGAAGGGAAGATCG
GCCTAAATTTGGGTTAGATAAACCCCAAAGAAAACCGCAAAAAATTCCTATCGGTAATAGTAGTCTGACGGTCAAATTTT
CCCCCGATTCTACCGCTTATCCCTGGGCAATTACTAGCAATGGTCTCATTGGTGAAACTTTAAATAAAGCTGAAAAATCC
GTGAATTTAGCCCTGTTTGTCCTGACGGAACAGCCTCTAGCTAATATTCTCGCCCAACGACATCGAAAAGGGATAGAAAT
TAAAGCTTTAATTGATCCTAGTTTTGCCTTCCGATACTATAGCGAAGGATTAGATTTATTAGGAGTTGCTCTCAGTAATA
AATGTCGTTATGAACCAGATAATCAGCCTTGGCAAAACCCAATTAATACCCTAGGAGTTACCGATCTAGCCCCGGGAGAT
AAATTACACCATAAATTCGGTTTAATCGATGATAAAATTGTGATTACTGGTTCTCATAATTGGTCAAGAGCCGCTAACCA
TCAAAACGATGAAGCTTTAGTTATTATCGATAATCCCACCGTTGCCGCTCATTTCGATCGAGAATTTCAATATCTTTACC
GTACCGCTAAATTAGGACTGCCGGAAACTATTAAAAATCGGATCGAACAGGATAGAAAAAACTGCCCCCAATCTGTAACA
ATTAAAAGCGATCGCTTAATTAATTTAAACACCGCCACCAAAGAAGAACTAGATAGTTTACCCGGTATCAGTGGCAAATT
AGCCGAAAAAATTATCGCTGCCAGGCAACAAAAACCCTTTACTTCCCTAGAAGATTTGGATCGAGTATCGGGAATCGGTC
AGGGAAAAATTAGCAAGCTCAAAGGCAAAGTCAGCTGGTGA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(312-452)

PLD-like domain (PLDc_2)

(85-262)

Helix-hairpin-helix motif (HHH_3)

(485-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G9JSV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

51.595

97.619

0.504

Multiple sequence alignment