Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   GYH29_RS23875 Genome accession   NZ_AP019312
Coordinates   5145035..5146366 (-) Length   443 a.a.
NCBI ID   WP_019103405.1    Uniprot ID   A0AAD0RUG0
Organism   Chromobacterium haemolyticum strain CH06-BL     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5140035..5151366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYH29_RS23850 (CH06BL_47150) alr 5140641..5141870 (+) 1230 WP_161524499.1 alanine racemase -
  GYH29_RS23855 (CH06BL_47160) - 5141988..5142281 (+) 294 WP_019102311.1 hypothetical protein -
  GYH29_RS23860 - 5142894..5142895 (-) 2 WP_118268077.1 IS5 family transposase -
  GYH29_RS23865 (CH06BL_47180) - 5143340..5143555 (-) 216 WP_043593468.1 YdcH family protein -
  GYH29_RS23870 (CH06BL_47190) - 5143888..5144646 (-) 759 WP_019103406.1 ABC transporter substrate-binding protein -
  GYH29_RS23875 (CH06BL_47200) pilR 5145035..5146366 (-) 1332 WP_019103405.1 sigma-54 dependent transcriptional regulator Regulator
  GYH29_RS23880 (CH06BL_47210) - 5146359..5147912 (-) 1554 WP_161524500.1 nitrogen regulation protein NR(II) -
  GYH29_RS23885 (CH06BL_47220) parC 5147909..5150278 (-) 2370 WP_043593464.1 DNA topoisomerase IV subunit A -
  GYH29_RS23890 (CH06BL_47230) - 5150445..5150912 (+) 468 WP_019101209.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 443 a.a.        Molecular weight: 48923.03 Da        Isoelectric Point: 5.2923

>NTDB_id=72396 GYH29_RS23875 WP_019103405.1 5145035..5146366(-) (pilR) [Chromobacterium haemolyticum strain CH06-BL]
MAKSSLRVLVIDDEPDIRELLELTLIKMGLDVATAASVGAAKLSLNSQPFDLALTDMRLPDGEGIEVVRHIAEQGLDVPI
AVITAYGNTDNAVLAMKAGAFDYLQKPVSLAQLRSLVKSVLRVDNGKTEAAVRLDGESPAIQEALRLIGKLARSQAAVYV
SGESGTGKEQAARMIHEHSARSERPFIPVNCGAIPETLMESEFFGYRKGAFTGADNDRDGFFQQANGGTLFLDEVADLPL
AMQVKLLRAIQEKKVRRLGNAQEEAVDVRIICATHKDLAARVDAGNFRQDLYYRLNVLPLRMPPLRELREDLPRYIASLL
ERFSPDEKPRLAPAALKALLEYNYPGNFRELENILERAVALANDARIELQDLQLLPSDHAGQGDGEAPTCADGEALQDFL
DRVEREAILKALESTRFNRTQAAKMLGVTFRSMRYRMERLGIK

Nucleotide


Download         Length: 1332 bp        

>NTDB_id=72396 GYH29_RS23875 WP_019103405.1 5145035..5146366(-) (pilR) [Chromobacterium haemolyticum strain CH06-BL]
ATGGCTAAATCTTCCCTGCGCGTGCTGGTGATCGACGACGAACCGGACATCCGCGAACTGCTGGAACTGACCCTGATCAA
GATGGGTCTGGACGTGGCCACCGCCGCCAGCGTCGGCGCCGCCAAACTCAGCCTGAACAGCCAGCCCTTCGACCTGGCGC
TGACCGATATGCGCCTGCCGGACGGCGAGGGCATCGAAGTGGTGCGTCATATCGCCGAACAGGGCCTGGACGTGCCCATC
GCGGTGATCACCGCCTACGGCAACACCGACAACGCGGTGCTGGCGATGAAGGCCGGCGCCTTCGACTACCTGCAAAAACC
GGTCAGTCTGGCGCAATTGCGCAGTCTGGTGAAATCCGTGCTGCGTGTGGACAACGGCAAAACCGAGGCCGCGGTGCGGC
TCGACGGCGAATCGCCGGCGATCCAGGAAGCGCTGCGCTTGATCGGCAAGCTGGCGCGCAGTCAGGCCGCGGTTTACGTC
AGCGGCGAATCCGGCACCGGCAAGGAACAGGCGGCGCGGATGATACACGAGCACAGCGCGCGCTCCGAACGGCCGTTCAT
CCCGGTCAACTGCGGCGCCATCCCGGAAACGCTGATGGAAAGCGAATTCTTCGGCTACCGCAAAGGCGCGTTCACCGGCG
CCGACAACGACCGCGACGGTTTCTTCCAGCAAGCCAACGGCGGCACGCTGTTTCTGGACGAAGTGGCCGACCTGCCGCTG
GCGATGCAGGTCAAACTGCTGCGCGCGATTCAGGAAAAGAAAGTGCGCCGCCTGGGCAACGCCCAGGAAGAAGCGGTGGA
CGTGCGCATCATCTGCGCCACCCACAAGGACCTGGCGGCGCGGGTAGACGCCGGCAACTTTCGCCAGGACCTGTACTACC
GGCTAAATGTGCTGCCGCTGCGCATGCCGCCGCTGCGCGAACTGCGCGAGGATCTGCCGCGCTACATCGCCAGCCTGCTG
GAACGCTTTTCCCCCGACGAAAAGCCGCGGCTGGCGCCCGCGGCGCTCAAAGCCTTGCTGGAATACAACTATCCGGGTAA
TTTCCGCGAACTGGAAAACATCCTGGAACGCGCGGTGGCCCTGGCCAACGACGCCCGTATTGAATTGCAGGATCTGCAAC
TGCTGCCGAGCGATCACGCCGGCCAGGGCGATGGCGAGGCGCCGACCTGCGCCGACGGCGAAGCGCTGCAGGACTTTCTA
GACCGCGTGGAACGCGAAGCCATCCTCAAGGCGCTGGAGAGCACTCGCTTCAATCGCACCCAGGCCGCCAAGATGCTAGG
CGTCACCTTCAGATCGATGCGCTATCGGATGGAAAGACTGGGCATCAAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(400-439)

Sigma-54 interaction domain (Sigma54_activat)

(136-300)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.202

100

0.585
  pilR Acinetobacter baumannii strain A118

45.376

100

0.476
  luxO Vibrio cholerae strain A1552

37.162

100

0.372

Multiple sequence alignment