Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   K5606_RS01550 Genome accession   NZ_AP024318
Coordinates   356283..357128 (+) Length   281 a.a.
NCBI ID   WP_001825659.1    Uniprot ID   -
Organism   Staphylococcus aureus strain S36     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 351283..362128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5606_RS01535 (S36TP_03020) - 351549..353390 (-) 1842 WP_000077324.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -
  K5606_RS01540 (S36TP_03030) metC 353359..354519 (-) 1161 WP_000175863.1 cystathionine beta-lyase MetC -
  K5606_RS01545 (S36TP_03040) - 354516..355619 (-) 1104 WP_000655690.1 PLP-dependent transferase -
  K5606_RS01550 (S36TP_03050) spo0J 356283..357128 (+) 846 WP_001825659.1 ParB/RepB/Spo0J family partition protein Regulator
  K5606_RS01555 (S36TP_03060) - 357282..358163 (+) 882 WP_221063082.1 mechanosensitive ion channel family protein -
  K5606_RS01560 (S36TP_03070) - 358193..358396 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  K5606_RS01565 (S36TP_03080) ychF 358408..359505 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  K5606_RS01570 (S36TP_03090) - 359591..359782 (-) 192 WP_001052481.1 hypothetical protein -
  K5606_RS01575 (S36TP_03100) rpsF 360026..360322 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  K5606_RS01580 (S36TP_03110) ssbA 360343..360846 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  K5606_RS01585 (S36TP_03120) rpsR 360898..361140 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  K5606_RS13840 - 361377..361604 (-) 228 Protein_318 Abi family protein -
  K5606_RS13685 - 361597..361873 (-) 277 Protein_319 site-specific integrase -

Sequence


Protein


Download         Length: 281 a.a.        Molecular weight: 32797.86 Da        Isoelectric Point: 10.0554

>NTDB_id=72385 K5606_RS01550 WP_001825659.1 356283..357128(+) (spo0J) [Staphylococcus aureus strain S36]
MSELSKSEDQRITKTKDEQIKKIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGAKVDISIKKSVGKISFEFESQDDFVRIIEQLNRKYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=72385 K5606_RS01550 WP_001825659.1 356283..357128(+) (spo0J) [Staphylococcus aureus strain S36]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGAAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGTATTTTGCAACCAATTGTGCTAAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTACCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTTAGATATTTAGAAAACCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAGGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGA
GAACAGTATGGCGCAAAAGTAGATATATCGATAAAAAAATCAGTCGGCAAAATCTCATTTGAGTTTGAATCACAAGATGA
CTTTGTGAGAATCATTGAACAATTAAATCGTAAGTATGGTAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

40.996

92.883

0.381


Multiple sequence alignment