Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GYH29_RS14475 Genome accession   NZ_AP019312
Coordinates   3175752..3177113 (-) Length   453 a.a.
NCBI ID   WP_019104010.1    Uniprot ID   A0AAD0RSE5
Organism   Chromobacterium haemolyticum strain CH06-BL     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3170752..3182113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYH29_RS14455 (CH06BL_28810) - 3171270..3173810 (-) 2541 WP_019100425.1 TonB-dependent siderophore receptor -
  GYH29_RS14460 (CH06BL_28820) - 3174514..3174873 (+) 360 WP_019104007.1 DUF2325 domain-containing protein -
  GYH29_RS14465 (CH06BL_28830) - 3174993..3175172 (-) 180 WP_019104008.1 zf-HC2 domain-containing protein -
  GYH29_RS14470 (CH06BL_28840) - 3175169..3175729 (-) 561 WP_161524008.1 sigma-70 family RNA polymerase sigma factor -
  GYH29_RS14475 (CH06BL_28850) radA 3175752..3177113 (-) 1362 WP_019104010.1 DNA repair protein RadA Machinery gene
  GYH29_RS14480 (CH06BL_28860) - 3177141..3177704 (-) 564 WP_039756482.1 hypothetical protein -
  GYH29_RS14485 (CH06BL_28870) - 3177721..3178476 (-) 756 WP_043590022.1 SDR family oxidoreductase -
  GYH29_RS14490 (CH06BL_28880) hpnE 3178536..3179807 (-) 1272 WP_232060402.1 hydroxysqualene dehydroxylase HpnE -
  GYH29_RS14495 (CH06BL_28890) hpnD 3179812..3180657 (-) 846 WP_107732423.1 presqualene diphosphate synthase HpnD -
  GYH29_RS14500 (CH06BL_28900) hpnC 3180879..3181691 (-) 813 WP_161524009.1 squalene synthase HpnC -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49074.46 Da        Isoelectric Point: 7.1029

>NTDB_id=72383 GYH29_RS14475 WP_019104010.1 3175752..3177113(-) (radA) [Chromobacterium haemolyticum strain CH06-BL]
MAKIKTVFSCAECGGQTPKWQGQCPHCNAWNTLTEAVQAAPVANARFQSWSDSATQVQKLSDVQTEEVPRDPSGIDELDR
VLGGGVVRGAVILIGGDPGIGKSTLLLQALSEIGARRKVLYVSGEESPQQIALRATRLAVATERVNLLAEIRLETILETL
KRERPEVAVIDSIQTLYTDQVTSAPGSVSQVRECAAQLTRMAKQTGITILLVGHVTKEGSLAGPRVLEHMVDTVLYFEGD
SHSNYRMIRAIKNRFGAVNELGVFVMTDRGLKGVSNPSAIFLSSYRDDVAGSCVLVTQEGSRPLLVEIQALVDDCHGFQP
KRLTVGLEQNRLAMLLAVLHRHGGVACFDQDVFLNAVGGVKINEPAADLAIILAMVSSLRNRALPEKLVVFGEVGLAGEV
RPVARGQERLKEAAKLGFTRAIVPQANRPRQPIEGLHVIAVERLDQAVEFCRE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=72383 GYH29_RS14475 WP_019104010.1 3175752..3177113(-) (radA) [Chromobacterium haemolyticum strain CH06-BL]
ATGGCAAAAATCAAAACCGTTTTCAGTTGTGCCGAGTGCGGCGGTCAAACGCCCAAATGGCAGGGCCAGTGCCCGCATTG
CAACGCCTGGAACACCTTGACCGAGGCGGTGCAGGCCGCGCCGGTGGCCAACGCCCGTTTCCAGTCCTGGAGCGACAGCG
CCACTCAAGTGCAGAAGCTGTCCGATGTGCAAACCGAGGAAGTGCCGCGGGACCCGTCCGGCATCGACGAACTGGACCGG
GTGCTGGGCGGCGGCGTGGTGCGGGGCGCGGTGATTTTGATCGGTGGCGATCCCGGCATCGGCAAATCCACGCTATTGCT
GCAGGCGCTGTCCGAGATTGGCGCGCGCCGCAAGGTGCTCTACGTGTCCGGAGAGGAATCGCCGCAGCAGATCGCGCTGC
GCGCGACCCGGCTGGCGGTGGCCACCGAGCGCGTTAACCTGCTGGCGGAAATCCGGCTGGAAACCATCCTGGAAACACTG
AAGCGCGAGCGGCCGGAAGTGGCGGTGATCGACTCCATCCAGACCCTGTATACCGACCAAGTGACGTCGGCGCCGGGTTC
GGTGTCCCAGGTGCGCGAATGCGCGGCGCAACTGACGCGGATGGCCAAGCAGACCGGCATCACCATTTTGCTGGTGGGAC
ACGTCACCAAGGAAGGTTCGCTGGCCGGCCCGCGCGTGCTGGAGCATATGGTGGACACCGTGCTGTATTTCGAGGGCGAT
TCCCACTCCAATTACCGGATGATACGCGCGATCAAAAACCGTTTCGGCGCGGTCAACGAGTTGGGCGTGTTCGTGATGAC
GGACCGCGGCCTCAAGGGCGTGTCCAACCCCTCCGCTATCTTTCTGTCTTCCTACCGGGACGACGTGGCCGGCTCCTGCG
TGCTGGTCACCCAGGAGGGCAGCCGCCCGCTGCTGGTGGAGATCCAGGCGCTGGTGGACGATTGTCACGGCTTCCAGCCC
AAGCGCCTGACCGTGGGTCTGGAACAGAACCGCCTGGCCATGCTGCTGGCCGTGCTGCACCGCCACGGCGGCGTCGCCTG
CTTCGACCAGGATGTGTTCCTCAACGCGGTGGGCGGGGTCAAGATCAACGAGCCGGCGGCCGACTTGGCTATCATCCTGG
CCATGGTGTCCTCCTTGCGCAACCGGGCGTTGCCGGAAAAGCTGGTGGTGTTCGGCGAAGTGGGCCTGGCGGGCGAGGTG
CGCCCGGTGGCGCGCGGCCAGGAGCGCTTGAAGGAAGCGGCCAAGCTCGGATTCACCCGCGCCATCGTGCCGCAGGCCAA
CCGCCCGCGCCAGCCGATTGAGGGGTTGCACGTGATTGCGGTGGAGCGGCTGGATCAGGCGGTGGAGTTCTGCCGCGAGT
GA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(358-447)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.499
  radA Streptococcus mitis NCTC 12261

48.706

93.819

0.457
  radA Streptococcus mitis SK321

48.706

93.819

0.457
  radA Streptococcus pneumoniae Rx1

48.706

93.819

0.457
  radA Streptococcus pneumoniae D39

48.706

93.819

0.457
  radA Streptococcus pneumoniae R6

48.706

93.819

0.457
  radA Streptococcus pneumoniae TIGR4

48.706

93.819

0.457

Multiple sequence alignment