Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   M5S90_RS15640 Genome accession   NZ_CP103633
Coordinates   3209762..3210391 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2900     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3204762..3215391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5S90_RS15625 (M5S90_15625) helD 3205004..3207058 (-) 2055 WP_020232990.1 DNA helicase IV -
  M5S90_RS15630 (M5S90_15630) yccF 3207181..3207627 (+) 447 WP_001261235.1 YccF domain-containing protein -
  M5S90_RS15635 (M5S90_15635) yccS 3207637..3209799 (+) 2163 WP_000875041.1 YccS family putative transporter -
  M5S90_RS15640 (M5S90_15640) sxy/tfoX 3209762..3210391 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  M5S90_RS15645 (M5S90_15645) sulA 3210610..3211119 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  M5S90_RS15650 (M5S90_15650) ompA 3211476..3212528 (+) 1053 WP_000750418.1 porin OmpA -
  M5S90_RS15655 (M5S90_15655) matP 3212603..3213055 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  M5S90_RS15660 (M5S90_15660) ycbZ 3213241..3215001 (+) 1761 WP_029701764.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=723817 M5S90_RS15640 WP_000839153.1 3209762..3210391(-) (sxy/tfoX) [Escherichia coli strain 2900]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=723817 M5S90_RS15640 WP_000839153.1 3209762..3210391(-) (sxy/tfoX) [Escherichia coli strain 2900]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1