Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   GYH29_RS04285 Genome accession   NZ_AP019312
Coordinates   951980..953404 (-) Length   474 a.a.
NCBI ID   WP_019104258.1    Uniprot ID   -
Organism   Chromobacterium haemolyticum strain CH06-BL     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 946980..958404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYH29_RS04255 (CH06BL_08320) - 947037..948527 (-) 1491 WP_019104264.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  GYH29_RS04260 (CH06BL_08330) - 948573..949208 (-) 636 WP_019104263.1 flavin prenyltransferase UbiX -
  GYH29_RS04265 (CH06BL_08340) rapZ 949243..950085 (-) 843 WP_019104262.1 RNase adapter RapZ -
  GYH29_RS04270 (CH06BL_08350) hprK 950066..951022 (-) 957 WP_019104261.1 HPr(Ser) kinase/phosphatase -
  GYH29_RS04275 (CH06BL_08360) ptsN 951015..951476 (-) 462 WP_019104260.1 PTS IIA-like nitrogen regulatory protein PtsN -
  GYH29_RS04280 (CH06BL_08370) hpf 951598..951912 (-) 315 WP_019104259.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  GYH29_RS04285 (CH06BL_08380) rpoN/rpoN1 951980..953404 (-) 1425 WP_019104258.1 RNA polymerase factor sigma-54 Machinery gene
  GYH29_RS04290 (CH06BL_08390) lptB 953408..954136 (-) 729 WP_019104257.1 LPS export ABC transporter ATP-binding protein -
  GYH29_RS04295 (CH06BL_08400) lptA 954133..954687 (-) 555 WP_043591966.1 lipopolysaccharide transport periplasmic protein LptA -
  GYH29_RS04300 (CH06BL_08410) lptC 954677..955246 (-) 570 WP_019104255.1 LPS export ABC transporter periplasmic protein LptC -
  GYH29_RS04305 (CH06BL_08420) - 955243..955767 (-) 525 WP_019104254.1 HAD family hydrolase -
  GYH29_RS04310 (CH06BL_08430) - 955793..956773 (-) 981 WP_039756662.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 52267.23 Da        Isoelectric Point: 4.6778

>NTDB_id=72376 GYH29_RS04285 WP_019104258.1 951980..953404(-) (rpoN/rpoN1) [Chromobacterium haemolyticum strain CH06-BL]
MKQTLQLKVSQQLTLTPQLQQSIKLLQMSTLDLQTEVERFLLDNPLLERGDEAPQGEAADTTAGQEQDGAAETRDEASGD
DGERGAEAGELSDWGSGGRRGDGDDELDPMLNVPCPVSLREHLLAQLGEVALPTRDQAIVQLLIEELDDDGYLGQTLEDI
ASHLPLELEIEADELMIGLRLLQQFDPPGVGARSLPEALALQLQRLDPDEPQRELALAIVRDHLTLLGNRDYTRLKKQLS
VDDAALRAAQALIARLNPRPTAGFGASDTQYVIPDVSVRKRKGRWVAALNGGAVPRLRVNQMYARLLAENRGGNGEMSSR
LQEAKWLVKNIQQRFDTILKVAEAIVERQQSFFEHGEVAMRPLILRDIADELGLHESTVSRVTTQKYLLCPRGLFELKYF
FGSALETDSGGECSATAIKAHIRSLIDAESPSKPLSDSALVEALSKQGIQVARRTIAKYREAMQIPPVNQRKTL

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=72376 GYH29_RS04285 WP_019104258.1 951980..953404(-) (rpoN/rpoN1) [Chromobacterium haemolyticum strain CH06-BL]
ATGAAACAGACCCTTCAGCTCAAGGTATCGCAGCAGCTGACCCTGACGCCGCAGCTGCAGCAGTCGATCAAGCTGCTGCA
GATGTCCACTCTCGACCTGCAGACCGAAGTCGAGCGCTTCTTGCTGGATAATCCCTTGCTTGAGCGCGGCGACGAAGCGC
CGCAGGGCGAAGCGGCTGACACCACCGCCGGCCAGGAACAGGACGGCGCCGCGGAAACCCGCGACGAGGCCTCCGGCGAC
GACGGCGAGCGCGGCGCCGAGGCCGGCGAACTGAGCGACTGGGGCAGCGGTGGCCGCCGCGGCGACGGCGACGACGAACT
GGACCCGATGCTGAACGTACCCTGTCCGGTCAGCCTGCGCGAGCACCTGCTGGCGCAACTGGGCGAAGTGGCGCTGCCCA
CGCGCGACCAGGCCATCGTTCAGTTGCTGATCGAAGAGCTGGACGACGACGGCTACCTGGGTCAAACGCTGGAAGACATC
GCCAGCCACCTGCCGCTGGAACTGGAAATCGAAGCCGACGAACTGATGATAGGCCTGCGCCTACTGCAACAGTTCGACCC
GCCCGGCGTCGGCGCGCGCTCGCTACCGGAAGCGCTGGCGCTGCAATTGCAGCGGCTGGATCCGGACGAGCCCCAGCGCG
AGCTGGCGCTGGCCATCGTCCGCGACCACCTGACCTTGCTGGGCAACCGAGACTACACCCGGCTGAAAAAGCAGCTGAGC
GTGGACGACGCCGCGCTGCGCGCCGCCCAGGCGCTGATTGCCCGCCTCAACCCCCGCCCCACCGCCGGTTTCGGCGCCAG
CGACACCCAATACGTGATCCCCGACGTCTCGGTCAGAAAGCGCAAGGGCCGCTGGGTGGCCGCCCTGAACGGCGGCGCCG
TGCCCAGGCTGCGCGTCAACCAGATGTACGCGCGGCTGCTGGCGGAAAACCGCGGCGGCAACGGCGAAATGTCCTCACGT
CTGCAAGAGGCGAAATGGCTGGTGAAGAACATCCAGCAGCGATTTGACACTATCCTGAAAGTGGCGGAAGCTATCGTTGA
ACGGCAGCAATCGTTCTTTGAACACGGCGAAGTGGCCATGCGCCCGCTGATCCTGCGCGACATCGCGGACGAGCTGGGTT
TGCATGAATCCACGGTTTCCAGAGTGACCACCCAGAAATACCTGCTCTGCCCGCGCGGCCTGTTCGAGCTCAAGTATTTC
TTCGGCAGCGCGCTGGAAACCGACAGCGGCGGCGAGTGCTCCGCTACCGCGATCAAGGCGCATATCCGCAGCCTGATAGA
CGCCGAATCGCCGAGCAAACCGCTGTCCGACAGCGCTCTGGTCGAAGCGCTGTCCAAACAGGGAATACAAGTTGCCAGAC
GCACGATAGCCAAGTATCGTGAAGCCATGCAGATACCGCCGGTCAACCAACGCAAGACGTTGTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(117-303)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.569

100

0.561

Multiple sequence alignment