Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   PYH57_RS02030 Genome accession   NZ_CP118810
Coordinates   432317..432730 (+) Length   137 a.a.
NCBI ID   WP_045178630.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 7062     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 427317..437730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH57_RS01980 (PYH57_01980) - 427664..427936 (+) 273 WP_353458961.1 pathogenicity island protein -
  PYH57_RS01985 (PYH57_01985) - 427938..428579 (+) 642 WP_262515863.1 pathogenicity island protein -
  PYH57_RS01990 (PYH57_01990) - 428927..429268 (+) 342 WP_001190600.1 hypothetical protein -
  PYH57_RS01995 (PYH57_01995) - 429280..429858 (+) 579 WP_353458960.1 pathogenicity island protein -
  PYH57_RS02000 (PYH57_02000) - 429876..430094 (+) 219 WP_000448775.1 capsid morphogenesis B protein -
  PYH57_RS02005 (PYH57_02005) - 430145..430672 (+) 528 WP_353458959.1 spore coat protein -
  PYH57_RS02010 (PYH57_02010) - 430675..430803 (+) 129 WP_353437238.1 hypothetical protein -
  PYH57_RS02015 (PYH57_02015) - 430804..431016 (+) 213 WP_252569588.1 pathogenicity island family protein -
  PYH57_RS02020 (PYH57_02020) - 431013..431582 (+) 570 WP_353459155.1 terminase small subunit -
  PYH57_RS02025 (PYH57_02025) - 431807..432214 (-) 408 WP_045178629.1 alkylhydroperoxidase -
  PYH57_RS02030 (PYH57_02030) lrpC 432317..432730 (+) 414 WP_045178630.1 Lrp/AsnC family transcriptional regulator Machinery gene
  PYH57_RS02035 (PYH57_02035) - 433452..434459 (-) 1008 WP_233641897.1 Abi family protein -
  PYH57_RS02040 (PYH57_02040) - 434465..435177 (-) 713 Protein_405 tyrosine-type recombinase/integrase -
  PYH57_RS02045 (PYH57_02045) selX 435377..435988 (+) 612 WP_000475322.1 staphylococcal enterotoxin-like toxin X -
  PYH57_RS02050 (PYH57_02050) - 436357..436725 (+) 369 WP_000849165.1 YxeA family protein -
  PYH57_RS02055 (PYH57_02055) - 436906..437478 (+) 573 WP_000769722.1 PepSY domain-containing protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 16202.63 Da        Isoelectric Point: 6.3646

>NTDB_id=723694 PYH57_RS02030 WP_045178630.1 432317..432730(+) (lrpC) [Staphylococcus aureus strain 7062]
MDDLINRKIIDTLLNNSRIPINELSKEVNLSAPAVRERLNKLEERGIIKDYTINIDYKKLGYDVEIFIELTIKNNRYKDF
KYFISKQDNVEFCYRVSGEACFVFKVWLENMNAAETFVDNLQSYGYTKCQFIFSKVV

Nucleotide


Download         Length: 414 bp        

>NTDB_id=723694 PYH57_RS02030 WP_045178630.1 432317..432730(+) (lrpC) [Staphylococcus aureus strain 7062]
ATGGATGACTTAATAAATAGAAAAATAATCGATACTTTGCTAAATAACAGTAGAATTCCTATTAATGAATTAAGTAAGGA
AGTGAATTTATCGGCTCCAGCTGTAAGAGAAAGGTTAAATAAACTTGAAGAAAGAGGTATTATTAAAGATTACACAATAA
ACATTGATTACAAAAAATTAGGATATGATGTAGAAATATTTATAGAGTTAACTATTAAAAATAATCGATACAAAGATTTT
AAATATTTTATATCCAAGCAGGATAATGTAGAATTTTGCTATCGAGTATCTGGAGAAGCGTGTTTTGTATTTAAGGTTTG
GTTGGAGAATATGAATGCAGCGGAAACGTTTGTAGATAATTTACAATCATATGGTTATACAAAATGTCAGTTTATTTTTT
CGAAAGTTGTTTGA

Domains

Predicted by InterProScan.

Winged helix-turn-helix DNA-binding (HTH_24)

(3-49)

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(68-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

41.791

97.81

0.409