Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   PWP91_RS12005 Genome accession   NZ_CP118738
Coordinates   2394447..2395217 (-) Length   256 a.a.
NCBI ID   WP_251899903.1    Uniprot ID   -
Organism   Lactococcus lactis strain P-1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2389447..2400217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWP91_RS11980 (PWP91_11980) - 2390472..2390879 (+) 408 WP_032946507.1 hypothetical protein -
  PWP91_RS11985 (PWP91_11985) - 2390980..2391285 (+) 306 WP_021721760.1 bacteriocin immunity protein -
  PWP91_RS11990 (PWP91_11990) - 2391376..2392557 (+) 1182 WP_228248543.1 tyrosine-type recombinase/integrase -
  PWP91_RS11995 (PWP91_11995) - 2392770..2393396 (+) 627 WP_017865091.1 copper homeostasis protein CutC -
  PWP91_RS12000 (PWP91_12000) - 2393435..2394454 (-) 1020 WP_015427107.1 ABC transporter permease -
  PWP91_RS12005 (PWP91_12005) pptA 2394447..2395217 (-) 771 WP_251899903.1 ABC transporter ATP-binding protein Regulator
  PWP91_RS12010 (PWP91_12010) - 2395236..2397041 (-) 1806 WP_058204387.1 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein -
  PWP91_RS12015 (PWP91_12015) - 2397320..2397721 (+) 402 WP_004254651.1 HIT family protein -
  PWP91_RS12020 (PWP91_12020) - 2397734..2397955 (+) 222 WP_010906257.1 hypothetical protein -
  PWP91_RS12025 (PWP91_12025) - 2397967..2398311 (-) 345 WP_004254648.1 hypothetical protein -
  PWP91_RS12030 (PWP91_12030) rplA 2398390..2399079 (-) 690 WP_004254644.1 50S ribosomal protein L1 -
  PWP91_RS12035 (PWP91_12035) rplK 2399376..2399801 (-) 426 WP_004254643.1 50S ribosomal protein L11 -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28444.97 Da        Isoelectric Point: 4.5320

>NTDB_id=723581 PWP91_RS12005 WP_251899903.1 2394447..2395217(-) (pptA) [Lactococcus lactis strain P-1]
MLKVTNLTGGYLGHPVLKDLNFEIKEGELVGLIGLNGAGKSTTIQEIIGLLTPYSGQIELDGLTLQQDLEGYRKKIGFIP
ETPSLYEELTLREHIEVTALAYGISVDLAFERAEKLLETFRLSDKLDWFPVNFSKGMKQKVMIICAFLVEPSLYIVDEPF
MGLDPLAIQDLIDLMIDMKKSGSSILMSTHILSTAEKFCDKFIVLHEGQVVAFGTVEELRTQFNQPKASLDEIYLALTKG
NIPNSKEVVEAGKSNE

Nucleotide


Download         Length: 771 bp        

>NTDB_id=723581 PWP91_RS12005 WP_251899903.1 2394447..2395217(-) (pptA) [Lactococcus lactis strain P-1]
ATGTTAAAAGTAACAAATCTAACAGGTGGCTATTTGGGGCATCCTGTCTTAAAAGACCTTAATTTTGAAATTAAAGAAGG
TGAGTTAGTTGGACTCATTGGTTTAAATGGTGCAGGAAAATCGACGACAATTCAAGAAATTATTGGACTTTTGACTCCTT
ATTCTGGACAAATTGAATTAGACGGCTTAACTTTACAACAAGATTTAGAAGGCTATCGTAAAAAAATTGGTTTCATTCCA
GAAACACCAAGTTTGTATGAAGAATTGACTTTGCGTGAACATATTGAAGTGACAGCTTTAGCTTACGGGATTTCTGTTGA
CTTGGCTTTTGAACGTGCTGAAAAATTATTAGAAACTTTCCGCTTGAGTGATAAATTAGATTGGTTCCCTGTGAATTTTT
CAAAAGGGATGAAACAAAAAGTGATGATTATCTGCGCATTCTTAGTGGAACCTTCGCTCTATATTGTTGATGAACCTTTT
ATGGGACTTGATCCGCTTGCGATTCAGGATTTGATTGACTTGATGATTGACATGAAAAAATCAGGAAGTTCGATTTTAAT
GAGTACACATATCTTGTCCACAGCTGAAAAATTCTGTGATAAATTTATTGTTTTGCATGAAGGTCAAGTTGTTGCTTTTG
GAACAGTAGAAGAATTACGGACTCAATTTAATCAGCCTAAGGCAAGTTTAGATGAAATTTATCTTGCCTTAACAAAAGGA
AATATTCCAAACTCTAAAGAAGTTGTAGAGGCAGGAAAGTCAAATGAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

67.355

94.531

0.637
  pptA Streptococcus thermophilus LMD-9

66.942

94.531

0.633