Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   PWP91_RS03320 Genome accession   NZ_CP118738
Coordinates   642213..642929 (-) Length   238 a.a.
NCBI ID   WP_021466934.1    Uniprot ID   -
Organism   Lactococcus lactis strain P-1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 637213..647929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWP91_RS03305 (PWP91_03305) cdaA 638905..639783 (+) 879 WP_003131542.1 diadenylate cyclase CdaA -
  PWP91_RS03310 (PWP91_03310) - 639773..640732 (+) 960 WP_012897245.1 CdaR family protein -
  PWP91_RS03315 (PWP91_03315) glmM 640778..642136 (+) 1359 WP_274998842.1 phosphoglucosamine mutase -
  PWP91_RS03320 (PWP91_03320) treR 642213..642929 (-) 717 WP_021466934.1 trehalose operon repressor Regulator
  PWP91_RS03325 (PWP91_03325) - 643040..643525 (+) 486 WP_274998843.1 PTS sugar transporter subunit IIA -
  PWP91_RS03330 (PWP91_03330) - 643662..645227 (+) 1566 WP_228248371.1 PTS transporter subunit EIIC -
  PWP91_RS03335 (PWP91_03335) - 645295..647604 (+) 2310 WP_058208678.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27906.57 Da        Isoelectric Point: 6.4168

>NTDB_id=723535 PWP91_RS03320 WP_021466934.1 642213..642929(-) (treR) [Lactococcus lactis strain P-1]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSVNYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT
SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTY
DYLEDNLGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=723535 PWP91_RS03320 WP_021466934.1 642213..642929(-) (treR) [Lactococcus lactis strain P-1]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC
AAGTGAAAATGAGCTCTCTGTTAATTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG
GGCTTATTCAAAGACGACATGGCTATGGTAGCATTGTCCTCGCTCATGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT
TCATACAAAGAACTACAAACCTCTATGGGTTTCCATAGTGAAACTGAGGTCATTCGCTTTGAAAGACTTGAAATTAACCC
TAAACTTTCAGAAACAACTGGTTTTGCCGTTGGGGAACACGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAAT
TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCGAAGGTTTAACTCCAGAACATGCTAAAATTTCAACCTAT
GACTACTTAGAAGATAATTTAGGGCTTGACATTGCCTATGCTCAAAAGGAAGTCACGATTGATTTTGCTTGCGAAGATGA
CTTTAAATACCTTGACTTAAACCCCAAAGACCATCATGTCGTGTCTGTCAAATCTCATGTTTATCTTGCTGATAATACTC
TTTTTCAGTATACTGAATCTCGTCATCAAGTCGACCGCTTTCGTTTCACAGAATTCGCTAGACGACAAAAAAGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(89-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

46.414

99.58

0.462