Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   PWP91_RS01185 Genome accession   NZ_CP118738
Coordinates   227649..228404 (+) Length   251 a.a.
NCBI ID   WP_274998720.1    Uniprot ID   -
Organism   Lactococcus lactis strain P-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 222649..233404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWP91_RS01155 (PWP91_01155) - 222704..223153 (+) 450 WP_058204254.1 GNAT family N-acetyltransferase -
  PWP91_RS01160 (PWP91_01160) - 223230..223472 (+) 243 WP_012896919.1 TM2 domain-containing protein -
  PWP91_RS01165 (PWP91_01165) - 223557..225179 (-) 1623 WP_058222955.1 SulP family inorganic anion transporter -
  PWP91_RS01170 (PWP91_01170) - 225389..225910 (+) 522 WP_033900573.1 GNAT family N-acetyltransferase -
  PWP91_RS01180 (PWP91_01180) - 226375..227550 (+) 1176 WP_180259427.1 pyridoxal phosphate-dependent aminotransferase -
  PWP91_RS01185 (PWP91_01185) recO 227649..228404 (+) 756 WP_274998720.1 DNA repair protein RecO Machinery gene
  PWP91_RS01190 (PWP91_01190) - 228518..228691 (+) 174 WP_021214949.1 helix-turn-helix domain-containing protein -
  PWP91_RS01195 (PWP91_01195) lpdA 228762..230180 (-) 1419 WP_010905074.1 dihydrolipoyl dehydrogenase -
  PWP91_RS01200 (PWP91_01200) - 230374..231972 (-) 1599 WP_021723187.1 2-oxo acid dehydrogenase subunit E2 -
  PWP91_RS01205 (PWP91_01205) - 231965..232945 (-) 981 WP_010905076.1 alpha-ketoacid dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28631.83 Da        Isoelectric Point: 6.2346

>NTDB_id=723520 PWP91_RS01185 WP_274998720.1 227649..228404(+) (recO) [Lactococcus lactis strain P-1]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMGVVTNIFELQVLHRFGISLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=723520 PWP91_RS01185 WP_274998720.1 227649..228404(+) (recO) [Lactococcus lactis strain P-1]
ATGCGTGATGCCGAAACTCAAGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCGCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGGAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGA
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.472

98.008

0.534