Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PVY36_RS17270 Genome accession   NZ_CP118681
Coordinates   3534755..3535360 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain HZDC01     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3529755..3540360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVY36_RS17250 (PVY36_17195) aes 3529792..3530751 (+) 960 WP_000801832.1 acetyl esterase -
  PVY36_RS17255 (PVY36_17200) hemH 3530748..3531710 (-) 963 WP_001250088.1 ferrochelatase -
  PVY36_RS17260 (PVY36_17205) adk 3531946..3532590 (-) 645 WP_001220233.1 adenylate kinase -
  PVY36_RS17265 (PVY36_17210) htpG 3532771..3534645 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  PVY36_RS17270 (PVY36_17215) recR 3534755..3535360 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PVY36_RS17275 (PVY36_17220) ybaB 3535360..3535689 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PVY36_RS17280 (PVY36_17225) dnaX 3535742..3537673 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  PVY36_RS17285 (PVY36_17230) apt 3537802..3538353 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PVY36_RS17290 (PVY36_17235) ybaN 3538506..3538883 (-) 378 WP_001188905.1 DUF454 family protein -
  PVY36_RS17295 (PVY36_17240) priC 3538953..3539480 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  PVY36_RS17300 (PVY36_17245) rsmS 3539494..3539655 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=723406 PVY36_RS17270 WP_001195025.1 3534755..3535360(-) (recR) [Escherichia coli strain HZDC01]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=723406 PVY36_RS17270 WP_001195025.1 3534755..3535360(-) (recR) [Escherichia coli strain HZDC01]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443