Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PVY36_RS14675 Genome accession   NZ_CP118681
Coordinates   2975242..2975871 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain HZDC01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2970242..2980871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVY36_RS14660 (PVY36_14630) helD 2970484..2972538 (-) 2055 WP_000420536.1 DNA helicase IV -
  PVY36_RS14665 (PVY36_14635) yccF 2972661..2973107 (+) 447 WP_001261235.1 YccF domain-containing protein -
  PVY36_RS14670 (PVY36_14640) yccS 2973117..2975279 (+) 2163 WP_000875020.1 YccS family putative transporter -
  PVY36_RS14675 (PVY36_14645) sxy/tfoX 2975242..2975871 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PVY36_RS14680 (PVY36_14650) sulA 2976090..2976599 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PVY36_RS14685 (PVY36_14655) ompA 2976956..2977996 (+) 1041 WP_000750416.1 porin OmpA -
  PVY36_RS14690 (PVY36_14660) matP 2978072..2978524 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PVY36_RS14695 (PVY36_14665) ycbZ 2978710..2980470 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=723398 PVY36_RS14675 WP_000839153.1 2975242..2975871(-) (sxy/tfoX) [Escherichia coli strain HZDC01]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=723398 PVY36_RS14675 WP_000839153.1 2975242..2975871(-) (sxy/tfoX) [Escherichia coli strain HZDC01]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1