Detailed information NTG0723372

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PVY36_RS05135
• Genome accession: NZ_CP118681
• Coordinates: 1045288..1046280 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain HZDC01
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1040288..1051280

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PVY36_RS05105 (PVY36_05090)	ispD	1040349..1041059 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PVY36_RS05110 (PVY36_05095)	ispF	1041059..1041538 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PVY36_RS05115 (PVY36_05100)	truD	1041535..1042584 (+)	1050	WP_073461637.1	tRNA pseudouridine(13) synthase TruD	-
PVY36_RS05120 (PVY36_05105)	surE	1042565..1043326 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PVY36_RS05125 (PVY36_05110)	pcm	1043320..1043946 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PVY36_RS05130 (PVY36_05115)	nlpD	1044131..1045225 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
PVY36_RS05135 (PVY36_05120)	rpoS	1045288..1046280 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PVY36_RS05140 (PVY36_05125)	ygbN	1046374..1047738 (-)	1365	WP_000104429.1	GntP family transporter	-
PVY36_RS05145 (PVY36_05130)	ygbM	1047827..1048603 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
PVY36_RS05150 (PVY36_05135)	ygbL	1048608..1049246 (-)	639	WP_001278994.1	aldolase	-
PVY36_RS05155 (PVY36_05140)	otnK	1049243..1050505 (-)	1263	Protein_1010	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=723372 PVY36_RS05135 WP_000081550.1 1045288..1046280(+) (rpoS) [Escherichia coli strain HZDC01]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=723372 PVY36_RS05135 WP_000081550.1 1045288..1046280(+) (rpoS) [Escherichia coli strain HZDC01]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715