Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PUL49_RS29290 Genome accession   NZ_CP118641
Coordinates   6307416..6308012 (-) Length   198 a.a.
NCBI ID   WP_273658604.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain P23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6302416..6313012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUL49_RS29270 (PUL49_29260) aroK 6303547..6304065 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PUL49_RS29275 (PUL49_29265) pilQ 6304077..6306221 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  PUL49_RS29280 (PUL49_29270) comL/pilP 6306275..6306799 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PUL49_RS29285 (PUL49_29275) pilO 6306796..6307419 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PUL49_RS29290 (PUL49_29280) pilN 6307416..6308012 (-) 597 WP_273658604.1 type 4a pilus biogenesis protein PilN Machinery gene
  PUL49_RS29295 (PUL49_29285) pilM 6308012..6309076 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PUL49_RS29300 (PUL49_29290) - 6309261..6311732 (+) 2472 WP_043096086.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22243.57 Da        Isoelectric Point: 10.0895

>NTDB_id=723333 PUL49_RS29290 WP_273658604.1 6307416..6308012(-) (pilN) [Pseudomonas aeruginosa strain P23]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTSKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=723333 PUL49_RS29290 WP_273658604.1 6307416..6308012(-) (pilN) [Pseudomonas aeruginosa strain P23]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCGGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGATTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGTCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCAGCAAGAACATTGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369