Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PUL49_RS29280 Genome accession   NZ_CP118641
Coordinates   6306275..6306799 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain P23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6301275..6311799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUL49_RS29265 (PUL49_29255) aroB 6302391..6303497 (-) 1107 WP_003112148.1 3-dehydroquinate synthase -
  PUL49_RS29270 (PUL49_29260) aroK 6303547..6304065 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PUL49_RS29275 (PUL49_29265) pilQ 6304077..6306221 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  PUL49_RS29280 (PUL49_29270) comL/pilP 6306275..6306799 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PUL49_RS29285 (PUL49_29275) pilO 6306796..6307419 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PUL49_RS29290 (PUL49_29280) pilN 6307416..6308012 (-) 597 WP_273658604.1 type 4a pilus biogenesis protein PilN Machinery gene
  PUL49_RS29295 (PUL49_29285) pilM 6308012..6309076 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PUL49_RS29300 (PUL49_29290) - 6309261..6311732 (+) 2472 WP_043096086.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=723331 PUL49_RS29280 WP_003095836.1 6306275..6306799(-) (comL/pilP) [Pseudomonas aeruginosa strain P23]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=723331 PUL49_RS29280 WP_003095836.1 6306275..6306799(-) (comL/pilP) [Pseudomonas aeruginosa strain P23]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362