Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   K5602_RS05905 Genome accession   NZ_AP024315
Coordinates   1249972..1251123 (+) Length   383 a.a.
NCBI ID   WP_221062125.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BDH17     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1244972..1256123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5602_RS05880 (BDH17TP_11230) yfmH 1245802..1247088 (+) 1287 WP_000664762.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  K5602_RS05885 (BDH17TP_11240) ymfI 1247088..1247792 (+) 705 WP_000646222.1 elongation factor P 5-aminopentanone reductase -
  K5602_RS05890 (BDH17TP_11250) - 1247897..1248724 (+) 828 WP_000214890.1 YmfK family protein -
  K5602_RS05895 (BDH17TP_11260) - 1248743..1249135 (+) 393 WP_103146257.1 RodZ family helix-turn-helix domain-containing protein -
  K5602_RS05900 (BDH17TP_11270) pgsA 1249169..1249747 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  K5602_RS05905 (BDH17TP_11280) cinA 1249972..1251123 (+) 1152 WP_221062125.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  K5602_RS05910 (BDH17TP_11290) recA 1251288..1252331 (+) 1044 WP_000368166.1 recombinase RecA -
  K5602_RS05915 (BDH17TP_11300) rny 1252685..1254244 (+) 1560 WP_001050913.1 ribonuclease Y -
  K5602_RS05920 (BDH17TP_11310) - 1254541..1254756 (-) 216 WP_000026308.1 hypothetical protein -
  K5602_RS05925 (BDH17TP_11320) - 1254930..1255727 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43097.33 Da        Isoelectric Point: 5.9350

>NTDB_id=72332 K5602_RS05905 WP_221062125.1 1249972..1251123(+) (cinA) [Staphylococcus aureus strain BDH17]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKINEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALISLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=72332 K5602_RS05905 WP_221062125.1 1249972..1251123(+) (cinA) [Staphylococcus aureus strain BDH17]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAATGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACACTCTGAACTATTAAGATTTGCTGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAGCAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTAATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTTATAA
GCTTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433


Multiple sequence alignment