Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   M5S54_RS14280 Genome accession   NZ_CP103544
Coordinates   2925665..2926294 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 3036     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2920665..2931294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5S54_RS14265 (M5S54_14265) helD 2920907..2922961 (-) 2055 WP_001315388.1 DNA helicase IV -
  M5S54_RS14270 (M5S54_14270) yccF 2923084..2923530 (+) 447 WP_001261235.1 YccF domain-containing protein -
  M5S54_RS14275 (M5S54_14275) yccS 2923540..2925702 (+) 2163 WP_000875044.1 YccS family putative transporter -
  M5S54_RS14280 (M5S54_14280) sxy/tfoX 2925665..2926294 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  M5S54_RS14285 (M5S54_14285) sulA 2926513..2927022 (+) 510 WP_063100170.1 SOS-induced cell division inhibitor SulA -
  M5S54_RS14290 (M5S54_14290) ompA 2927379..2928431 (+) 1053 WP_000750419.1 porin OmpA -
  M5S54_RS14295 (M5S54_14295) matP 2928506..2928958 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  M5S54_RS14300 (M5S54_14300) ycbZ 2929144..2930904 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=723264 M5S54_RS14280 WP_000839153.1 2925665..2926294(-) (sxy/tfoX) [Escherichia coli strain 3036]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=723264 M5S54_RS14280 WP_000839153.1 2925665..2926294(-) (sxy/tfoX) [Escherichia coli strain 3036]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAGGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1