Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PUL49_RS02130 Genome accession   NZ_CP118641
Coordinates   458443..458808 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain P23     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 453443..463808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUL49_RS02100 (PUL49_02100) pyrR 454065..454577 (-) 513 WP_116815279.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  PUL49_RS02105 (PUL49_02105) ruvX 454689..455123 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  PUL49_RS02110 (PUL49_02110) - 455123..455692 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  PUL49_RS02115 (PUL49_02115) - 455741..456634 (-) 894 WP_003162015.1 energy transducer TonB -
  PUL49_RS02120 (PUL49_02120) gshB 456781..457734 (-) 954 WP_003162014.1 glutathione synthase -
  PUL49_RS02125 (PUL49_02125) pilG 457989..458396 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  PUL49_RS02130 (PUL49_02130) pilH 458443..458808 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  PUL49_RS02135 (PUL49_02135) - 458859..459395 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  PUL49_RS02140 (PUL49_02140) pilJ 459480..461528 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  PUL49_RS02145 (PUL49_02145) pilK 461589..462464 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=723258 PUL49_RS02130 WP_003084587.1 458443..458808(+) (pilH) [Pseudomonas aeruginosa strain P23]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=723258 PUL49_RS02130 WP_003084587.1 458443..458808(+) (pilH) [Pseudomonas aeruginosa strain P23]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364