Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PUN20_RS18500 Genome accession   NZ_CP118638
Coordinates   3989316..3989912 (-) Length   198 a.a.
NCBI ID   WP_023087605.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain P9     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3984316..3994912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN20_RS18475 (PUN20_18460) - 3984662..3984859 (-) 198 Protein_3655 TetR family transcriptional regulator -
  PUN20_RS18480 (PUN20_18465) - 3984952..3986535 (+) 1584 WP_003121915.1 NAD(P)/FAD-dependent oxidoreductase -
  PUN20_RS18485 (PUN20_18470) - 3986532..3987419 (+) 888 WP_003103932.1 SDR family NAD(P)-dependent oxidoreductase -
  PUN20_RS18490 (PUN20_18475) - 3987493..3988032 (+) 540 WP_003103931.1 CbrC family protein -
  PUN20_RS18495 (PUN20_18480) - 3988045..3989193 (-) 1149 WP_003103930.1 acyl-CoA dehydrogenase family protein -
  PUN20_RS18500 (PUN20_18485) recR 3989316..3989912 (-) 597 WP_023087605.1 recombination mediator RecR Machinery gene
  PUN20_RS18505 (PUN20_18490) - 3989991..3990317 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  PUN20_RS18510 (PUN20_18495) dnaX 3990363..3992420 (-) 2058 WP_273647164.1 DNA polymerase III subunit gamma/tau -
  PUN20_RS18515 (PUN20_18500) - 3992457..3993323 (+) 867 WP_003120462.1 ABC transporter substrate-binding protein -
  PUN20_RS18525 (PUN20_18510) - 3993577..3993954 (-) 378 WP_003083354.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21185.48 Da        Isoelectric Point: 6.0063

>NTDB_id=723199 PUN20_RS18500 WP_023087605.1 3989316..3989912(-) (recR) [Pseudomonas aeruginosa strain P9]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALIAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=723199 PUN20_RS18500 WP_023087605.1 3989316..3989912(-) (recR) [Pseudomonas aeruginosa strain P9]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGATCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGTTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTATCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-78)

Toprim domain (Toprim_4)

(81-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48