Detailed information NTG0723090

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OU688_RS05670
• Genome accession: NZ_CP118601
• Coordinates: 1167669..1168661 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain NB4833
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1162669..1173661

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OU688_RS05640 (OU688_05640)	ispD	1162730..1163440 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OU688_RS05645 (OU688_05645)	ispF	1163440..1163919 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OU688_RS05650 (OU688_05650)	truD	1163916..1164965 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
OU688_RS05655 (OU688_05655)	surE	1164946..1165707 (+)	762	WP_001349984.1	5'/3'-nucleotidase SurE	-
OU688_RS05660 (OU688_05660)	pcm	1165701..1166327 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OU688_RS05665 (OU688_05665)	nlpD	1166512..1167606 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
OU688_RS05670 (OU688_05670)	rpoS	1167669..1168661 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
OU688_RS05675 (OU688_05675)	-	1168782..1169189 (-)	408	WP_001208072.1	MarR family transcriptional regulator	-
OU688_RS05680 (OU688_05680)	-	1169336..1169929 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
OU688_RS05685 (OU688_05685)	-	1169929..1171356 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
OU688_RS05690 (OU688_05690)	-	1171367..1171603 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
OU688_RS05695 (OU688_05695)	ygbN	1171642..1173006 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=723090 OU688_RS05670 WP_000081550.1 1167669..1168661(+) (rpoS) [Escherichia coli strain NB4833]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=723090 OU688_RS05670 WP_000081550.1 1167669..1168661(+) (rpoS) [Escherichia coli strain NB4833]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715