Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   PV796_RS22880 Genome accession   NZ_CP118574
Coordinates   5268577..5269578 (+) Length   333 a.a.
NCBI ID   WP_274915210.1    Uniprot ID   -
Organism   Streptomyces sp. WZ-12     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5263577..5274578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PV796_RS22855 - 5264549..5265046 (-) 498 WP_274915205.1 MarR family transcriptional regulator -
  PV796_RS22860 - 5265173..5266225 (-) 1053 WP_274915206.1 questin oxidase family protein -
  PV796_RS22865 - 5266508..5267092 (+) 585 WP_274915207.1 pyridoxamine 5'-phosphate oxidase family protein -
  PV796_RS22870 - 5267184..5267738 (-) 555 WP_274915208.1 hypothetical protein -
  PV796_RS22875 - 5267870..5268385 (-) 516 WP_274915209.1 GNAT family N-acetyltransferase -
  PV796_RS22880 rpoS 5268577..5269578 (+) 1002 WP_274915210.1 sigma-70 family RNA polymerase sigma factor Regulator
  PV796_RS22885 - 5269990..5270760 (+) 771 WP_274919182.1 DeoR/GlpR family DNA-binding transcription regulator -
  PV796_RS22890 pfkB 5270819..5271907 (+) 1089 WP_274919184.1 1-phosphofructokinase -
  PV796_RS22895 - 5271900..5274017 (+) 2118 WP_274915211.1 fructose-specific PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36873.24 Da        Isoelectric Point: 4.7111

>NTDB_id=723041 PV796_RS22880 WP_274915210.1 5268577..5269578(+) (rpoS) [Streptomyces sp. WZ-12]
MATRAVARRQASTTGSGEANSVRAAGGDIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYARQILDGEITDGNAA
GADREELEALAADGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPEEVAGELGSTAARVTDVLDWARDPVSLNMSVDDDGDTQ
FGDLLEDTSAASPEQSVLTLLRSEELEDLIDRLDQRTASIIKARYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLEL
KRMARDTGFDAAA

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=723041 PV796_RS22880 WP_274915210.1 5268577..5269578(+) (rpoS) [Streptomyces sp. WZ-12]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGGCCAGCACCACCGGTTCCGGCGAGGCCAACAGCGTTCGCGCAGCAGGCGG
GGACATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGCACGCCGCTGCTCGACGCGGCCAAGGAGG
TGGAGCTGTCCCAGACCATCGAGGCGGGCGTGTACGCCCGGCAGATCCTGGACGGCGAGATCACCGACGGCAATGCCGCC
GGTGCCGACCGTGAGGAGCTCGAAGCGTTGGCCGCCGACGGCGAGCGGGCCAAGGACGTCTTCATCCGGTCCAACCTGCG
CCTGGTCGTCGCCGTGGCCCGCCGTTACCCGCGCTCCGGCCTGCCGCTGCTGGACCTGATCCAGGAGGGCAACGCCGGCC
TGGTCCGCGCCGTCGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCGACGTGGTGGATCCGCCAGGCC
ATCACCCGCTCCATCGCCGACCAGTCGCGCACCATCCGGCTCCCCGTCCACCTCGTCGAGGAGCTCGGCCGGATCCGCCG
GGTGCAGCGCGAGTTCAACCGCGAGAACGGCCGCGATCCCGAGCCGGAGGAGGTGGCCGGCGAGCTCGGTTCCACCGCCG
CCCGGGTCACCGACGTCCTGGACTGGGCCCGCGACCCGGTCAGCCTGAACATGTCGGTGGACGACGACGGCGACACCCAG
TTCGGCGACCTGCTGGAGGACACCTCCGCGGCCTCCCCCGAGCAGTCCGTGCTCACGCTGCTGCGCAGCGAGGAGTTGGA
GGACCTGATCGACCGCCTCGACCAGCGCACCGCGTCGATCATCAAGGCCCGCTACGGCATCGAGGACGGCCGGGAGCGCA
CGCTGACCGAGGTCGGCAAGCAGCACGGTCTGACGCGTGAGCGGATCCGGCAGATCGAGAAGCACGCGCTGCTGGAGCTG
AAGCGGATGGCGCGGGACACCGGGTTCGACGCGGCGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(101-170)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(33-66)

Sigma-70, region 4 (Sigma70_r4)

(270-321)

Sigma-70 region 3 (Sigma70_r3)

(180-256)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

38.671

99.399

0.384