Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   PV796_RS16790 Genome accession   NZ_CP118574
Coordinates   3986556..3988289 (-) Length   577 a.a.
NCBI ID   WP_274914058.1    Uniprot ID   -
Organism   Streptomyces sp. WZ-12     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3981556..3993289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PV796_RS16775 - 3982450..3983262 (-) 813 WP_274914056.1 response regulator transcription factor -
  PV796_RS16780 - 3983515..3984426 (+) 912 WP_274914057.1 alpha/beta fold hydrolase -
  PV796_RS16785 rcrQ 3984526..3986427 (-) 1902 WP_274919065.1 ABC transporter ATP-binding protein Regulator
  PV796_RS16790 rcrP 3986556..3988289 (-) 1734 WP_274914058.1 ABC transporter ATP-binding protein Regulator
  PV796_RS16795 - 3988420..3988722 (+) 303 WP_274919066.1 MoaD/ThiS family protein -
  PV796_RS16800 - 3988733..3989863 (+) 1131 WP_274914059.1 hypothetical protein -
  PV796_RS16805 - 3990065..3990766 (+) 702 WP_274914060.1 DUF2993 domain-containing protein -
  PV796_RS16810 - 3991255..3992100 (+) 846 WP_274914061.1 sulfurtransferase -
  PV796_RS16815 - 3992140..3992427 (+) 288 WP_274914062.1 DUF1416 domain-containing protein -
  PV796_RS16820 - 3992562..3992861 (+) 300 WP_274914063.1 DUF3099 domain-containing protein -
  PV796_RS16825 - 3992892..3993257 (-) 366 WP_274914064.1 DsrE family protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62558.97 Da        Isoelectric Point: 7.1966

>NTDB_id=723030 PV796_RS16790 WP_274914058.1 3986556..3988289(-) (rcrP) [Streptomyces sp. WZ-12]
MLVRLARAHLRPYRRSISLIVLLQLIQTLATLYLPTLNADILDNGVVKGDTGYILRIGGFMVAVTLLQITCAVGAVYCGA
RTAMALGRDIRAAVFDQVQSFSAREVGGFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGVVMALNQDVPLSAL
LLVIVPVLGILVSLIVRRMRPLFRGVQERIDTVNRVLREQIAGIRVIRAFVRDRYERERFAGANTDLYDVSIRAGRLMSM
MGPLVMLIVNLSSVAVVWFGGLRIDGGQMQIGALAAFLSYLMYILMSIMMATFMVITLPRAEVCAERIQEVLATESSVTP
PAEPVTTLRRHGELELRDVEFRFPGAEQPVLKNVSLIARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGAVLVDGEDVR
TLAPETLAAVIGLVPQKPYLFSGTVASNLRYGNPDATDEELWQALGTAQAREFVERMEGGLQAPIAQGGSNVSGGQRQRL
AIARALVRKPEIYLFDDSFSALDYATDAALRAALARETDRATVVIVAQRVSTIRGADRIVVLDAGRIVGTGTHAELMADN
ETYREIVLSQLTEQEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=723030 PV796_RS16790 WP_274914058.1 3986556..3988289(-) (rcrP) [Streptomyces sp. WZ-12]
GTGTTGGTCCGACTCGCGCGGGCGCATCTGCGGCCCTACAGGCGCTCCATATCCCTGATCGTCCTGCTCCAGCTCATCCA
GACGCTGGCCACGCTCTACCTGCCCACCCTCAACGCCGACATCCTCGACAACGGTGTCGTGAAGGGGGACACGGGCTACA
TCCTGCGGATCGGCGGCTTCATGGTCGCGGTGACGCTGCTTCAGATCACCTGCGCGGTCGGCGCGGTCTACTGCGGCGCC
CGTACGGCCATGGCCCTGGGCCGGGACATCCGGGCCGCGGTCTTCGACCAGGTGCAGTCCTTCTCCGCCCGGGAGGTCGG
CGGCTTCGGTGCGCCGTCGCTGATCACCCGCACCACCAACGACGTCCAGCAGGTCCAGATGCTGGTGTTGATGACGTTCA
CGTTGATGGTCTCGGCGCCGATCATGTGCGTCGGCGGCGTCGTGATGGCGCTCAACCAGGACGTGCCGCTGTCCGCGCTC
CTCCTGGTCATCGTCCCGGTCCTCGGGATCCTCGTCTCACTCATCGTGCGCCGGATGCGCCCGCTGTTCCGCGGGGTGCA
GGAGCGCATCGACACCGTCAACCGCGTGCTGCGCGAGCAGATCGCCGGCATCCGCGTCATCCGCGCCTTCGTCCGGGACC
GCTATGAGCGCGAGCGGTTCGCCGGGGCCAACACCGACCTGTACGACGTCTCGATCCGCGCCGGCCGGCTGATGTCGATG
ATGGGCCCGCTGGTGATGCTGATCGTGAACCTCTCCAGCGTGGCCGTGGTGTGGTTCGGCGGGCTGCGCATCGACGGCGG
CCAGATGCAGATCGGGGCGCTGGCGGCCTTCCTCAGCTACCTGATGTACATCCTGATGTCGATCATGATGGCGACGTTCA
TGGTGATCACGCTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTGCTGGCGACCGAGTCCAGCGTCACCCCG
CCCGCCGAGCCGGTCACCACGCTGCGCCGCCACGGCGAACTGGAGCTGCGCGACGTGGAGTTCCGTTTCCCCGGCGCCGA
GCAGCCGGTCCTCAAGAACGTCTCGCTGATCGCCCGCCCCGGAGAGACCACCGCCGTCATCGGCTCCACCGGCTCCGGCA
AGTCCACCCTCCTGGGGCTGGTGCCCCGGCTCTTCGACGCCACCGACGGCGCGGTCCTGGTCGACGGCGAGGACGTGCGC
ACCCTCGCCCCGGAGACCCTGGCCGCCGTCATCGGCCTGGTCCCGCAGAAGCCGTACCTCTTCTCCGGGACGGTCGCCAG
CAACCTGCGGTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCAGGCGCTGGGCACCGCGCAGGCCCGGGAGTTCG
TCGAGCGGATGGAGGGCGGCCTCCAGGCGCCGATCGCGCAGGGCGGCTCCAACGTCTCCGGCGGTCAGCGGCAGCGGCTG
GCGATCGCCCGCGCCCTGGTCCGCAAGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTGGACTACGCCACCGA
CGCGGCCCTGCGCGCCGCGCTGGCCCGGGAGACCGACCGGGCCACCGTGGTGATCGTCGCCCAGCGGGTCTCCACGATCC
GCGGCGCCGACCGGATCGTGGTCCTGGACGCGGGGCGGATCGTGGGCACCGGCACCCACGCCGAGTTGATGGCCGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACCGAGCAGGAGGCGGCGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.357

97.054

0.392