Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   PV796_RS16785 Genome accession   NZ_CP118574
Coordinates   3984526..3986427 (-) Length   633 a.a.
NCBI ID   WP_274919065.1    Uniprot ID   -
Organism   Streptomyces sp. WZ-12     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3979526..3991427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PV796_RS16765 - 3980141..3981256 (-) 1116 WP_274914054.1 trypsin-like peptidase domain-containing protein -
  PV796_RS16770 - 3981400..3982425 (-) 1026 WP_274914055.1 LacI family DNA-binding transcriptional regulator -
  PV796_RS16775 - 3982450..3983262 (-) 813 WP_274914056.1 response regulator transcription factor -
  PV796_RS16780 - 3983515..3984426 (+) 912 WP_274914057.1 alpha/beta fold hydrolase -
  PV796_RS16785 rcrQ 3984526..3986427 (-) 1902 WP_274919065.1 ABC transporter ATP-binding protein Regulator
  PV796_RS16790 rcrP 3986556..3988289 (-) 1734 WP_274914058.1 ABC transporter ATP-binding protein Regulator
  PV796_RS16795 - 3988420..3988722 (+) 303 WP_274919066.1 MoaD/ThiS family protein -
  PV796_RS16800 - 3988733..3989863 (+) 1131 WP_274914059.1 hypothetical protein -
  PV796_RS16805 - 3990065..3990766 (+) 702 WP_274914060.1 DUF2993 domain-containing protein -

Sequence

Protein


Download         Length: 633 a.a.        Molecular weight: 68041.40 Da        Isoelectric Point: 6.3046

>NTDB_id=723029 PV796_RS16785 WP_274919065.1 3984526..3986427(-) (rcrQ) [Streptomyces sp. WZ-12]
MMGGPVEKSLDFKGSGKRLLAQMRPERGIVAVALLLGVLSVALTVVGPKVLGRATDLIMAGVIGRHLPEGLTEAQAVAEL
RAHGQGGFADMLGAMPVVPGHGVDFGAVGTILLGAVLIYAGSAAFGFTQARIATRVVQRTVFRLREQVEEKLARLPLSHF
DKQQRGEVLSRATNDIDNVQQTLQQTLSQIMASLLTILGVLGMMFWISPLLALVALITVPVSIVVATKVGKRAQPQFVRQ
WKTTGKLNAHIEEMYTGHSLVKVFGRQKESAALFREQNEALYAAGFRAQFISGIIQPAMMFIGNLNYVLVAVVGGLRVAS
GALSLGDVQAFIQYSRQFSQPLTQVAAMANLVQSGVASAERVFELLDAPEQDPDAEQPARPEQVTGRVAFEDVSFRYDEH
RPLIDGLSLTVRPGQTVAIVGPTGAGKTTLVNLLMRFYEVRGGRITLDGVDIAKMSREELRANIGMVLQDTWLFGGTIAE
NIAYGAPEGTSRDKVVEAARATHVDRFVRTLPDGYDTVIDEEGDNVSAGEKQLITIARAFLAEPAILVLDEATSSVDTRT
EVLIQHAMAQLRTGRTSFVIAHRLSTIRDADVILVMENGAIVEQGDHDALLAAGGAYARLYAAQFAEAVTEAG

Nucleotide


Download         Length: 1902 bp        

>NTDB_id=723029 PV796_RS16785 WP_274919065.1 3984526..3986427(-) (rcrQ) [Streptomyces sp. WZ-12]
ATGATGGGCGGCCCGGTCGAGAAGTCCCTGGACTTCAAGGGCTCCGGCAAGCGGCTGTTGGCCCAGATGCGGCCGGAGCG
CGGCATCGTCGCGGTGGCGCTGCTGCTGGGCGTGCTGAGCGTGGCGCTGACCGTCGTCGGCCCGAAGGTGCTGGGCCGCG
CCACCGACCTGATCATGGCCGGCGTCATCGGCCGCCACCTGCCCGAGGGCCTGACCGAGGCGCAGGCCGTCGCCGAGCTG
CGGGCGCACGGCCAGGGCGGGTTCGCCGACATGCTCGGCGCCATGCCGGTGGTCCCCGGCCACGGCGTCGACTTCGGCGC
CGTCGGCACCATCCTGCTCGGCGCCGTCCTGATCTACGCCGGCTCCGCCGCCTTCGGCTTCACCCAGGCCCGGATCGCCA
CCCGGGTCGTCCAACGCACCGTCTTCCGGCTGCGCGAGCAGGTCGAGGAGAAGCTGGCCCGGCTGCCGCTGAGCCACTTC
GACAAGCAGCAGCGCGGCGAGGTGCTCTCCCGCGCGACCAACGACATCGACAACGTCCAGCAGACGCTCCAGCAGACCCT
CAGCCAGATCATGGCCTCGCTGCTGACGATCCTGGGCGTGCTGGGGATGATGTTCTGGATCTCGCCGCTGCTGGCGCTGG
TCGCGCTGATCACCGTGCCGGTCTCGATCGTCGTCGCCACCAAGGTCGGCAAGCGCGCCCAGCCGCAGTTCGTCCGCCAG
TGGAAGACCACCGGCAAGCTCAACGCGCACATCGAGGAGATGTACACCGGCCACTCCCTGGTCAAGGTCTTCGGCCGCCA
GAAGGAGTCCGCCGCACTCTTCCGCGAGCAGAACGAGGCGCTCTACGCGGCCGGCTTCCGGGCCCAGTTCATCTCCGGGA
TCATCCAGCCCGCGATGATGTTCATCGGCAACCTCAACTACGTGCTGGTGGCCGTGGTCGGCGGTCTGCGGGTGGCCTCG
GGCGCGCTGTCCCTCGGCGACGTCCAGGCGTTCATCCAGTACAGCCGCCAGTTCAGCCAGCCGCTGACCCAGGTCGCGGC
GATGGCCAACCTCGTCCAGTCCGGCGTCGCCTCCGCCGAGCGGGTCTTCGAACTCCTCGACGCCCCCGAGCAGGACCCGG
ACGCCGAGCAGCCCGCCCGCCCCGAGCAGGTCACCGGTCGGGTCGCCTTCGAGGACGTCTCCTTCCGCTACGACGAGCAC
AGGCCGCTCATCGACGGTCTCTCGCTGACCGTCCGCCCCGGCCAGACCGTCGCCATCGTCGGCCCGACCGGCGCCGGCAA
GACCACCCTGGTCAACCTCCTGATGCGGTTCTACGAGGTCCGCGGCGGCCGGATCACCCTCGACGGCGTGGACATCGCGA
AGATGTCCCGCGAGGAGCTGCGCGCCAACATCGGCATGGTCCTCCAGGACACCTGGCTCTTCGGCGGCACCATCGCCGAG
AACATCGCCTACGGCGCCCCCGAGGGGACCTCCCGCGACAAGGTCGTCGAGGCGGCCCGGGCCACCCACGTCGACCGCTT
CGTCCGCACCCTCCCGGACGGCTACGACACCGTCATCGACGAGGAGGGCGACAACGTCTCGGCCGGCGAGAAGCAGTTGA
TCACCATCGCCCGGGCCTTCCTCGCGGAGCCGGCGATCCTCGTCCTGGACGAGGCCACCAGCTCGGTCGACACCCGCACC
GAGGTCCTCATCCAGCACGCGATGGCCCAACTCCGCACCGGCCGCACCAGCTTCGTCATCGCCCACCGCCTCTCCACGAT
CCGCGACGCCGACGTCATCCTGGTCATGGAGAACGGCGCGATCGTCGAACAGGGCGACCACGACGCCCTCTTGGCCGCCG
GGGGCGCCTACGCCCGGCTGTACGCGGCCCAGTTCGCGGAGGCGGTGACGGAGGCGGGGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(405-554)

ABC transporter transmembrane region (ABC_membrane)

(32-342)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.419

98.104

0.397