Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   M5T26_RS17165 Genome accession   NZ_CP103487
Coordinates   3478152..3478748 (-) Length   198 a.a.
NCBI ID   WP_195805791.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae subsp. quasipneumoniae strain 5463     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3473152..3483748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5T26_RS17150 (M5T26_17150) helD 3473363..3475417 (-) 2055 WP_112201719.1 DNA helicase IV -
  M5T26_RS17155 (M5T26_17155) - 3475542..3475988 (+) 447 WP_004201437.1 YccF domain-containing protein -
  M5T26_RS17160 (M5T26_17160) yccS 3476006..3478141 (+) 2136 WP_072413620.1 YccS family putative transporter -
  M5T26_RS17165 (M5T26_17165) sxy/tfoX 3478152..3478748 (-) 597 WP_195805791.1 TfoX/Sxy family DNA transformation protein Regulator
  M5T26_RS17170 (M5T26_17170) - 3478766..3479071 (-) 306 WP_158238131.1 hypothetical protein -
  M5T26_RS17175 (M5T26_17175) sulA 3479097..3479606 (+) 510 WP_023289052.1 SOS-induced cell division inhibitor SulA -
  M5T26_RS17180 (M5T26_17180) ompA 3479959..3481056 (+) 1098 WP_259428244.1 porin OmpA -
  M5T26_RS17185 (M5T26_17185) matP 3481203..3481655 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  M5T26_RS17190 (M5T26_17190) - 3481841..3483598 (+) 1758 WP_064158137.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22686.41 Da        Isoelectric Point: 10.0767

>NTDB_id=723018 M5T26_RS17165 WP_195805791.1 3478152..3478748(-) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain 5463]
MRKLVCPRLPQFQACVCPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKYRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWASAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=723018 M5T26_RS17165 WP_195805791.1 3478152..3478748(-) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain 5463]
ATGAGAAAACTCGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTGTCCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGGAATATTTATCTAAAGGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACACGGGCGCATCGTGCCGCTAAAG
TATTATCAAATCGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTGTCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATATCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCCAATATCAGTTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGCGAGAATAAT
GCTTCCCTATCGCACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTTCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGTCTGCGCGCTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(18-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

49.746

99.495

0.495