Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   PV796_RS11460 Genome accession   NZ_CP118574
Coordinates   2752291..2753088 (+) Length   265 a.a.
NCBI ID   WP_274912848.1    Uniprot ID   -
Organism   Streptomyces sp. WZ-12     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2747291..2758088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PV796_RS11450 - 2748193..2751075 (-) 2883 WP_274912846.1 vitamin B12-dependent ribonucleotide reductase -
  PV796_RS11455 nrdR 2751200..2751727 (-) 528 WP_274912847.1 transcriptional regulator NrdR -
  PV796_RS11460 dinR/lexA 2752291..2753088 (+) 798 WP_274912848.1 transcriptional repressor LexA Regulator
  PV796_RS11465 - 2753198..2755177 (-) 1980 WP_274912849.1 ATP-dependent DNA helicase -
  PV796_RS11470 - 2755220..2756932 (-) 1713 WP_274918978.1 IucA/IucC family siderophore biosynthesis protein -
  PV796_RS11475 - 2757143..2757823 (-) 681 WP_274912850.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 28813.53 Da        Isoelectric Point: 7.0671

>NTDB_id=723009 PV796_RS11460 WP_274912848.1 2752291..2753088(+) (dinR/lexA) [Streptomyces sp. WZ-12]
MTTTADSATITAQSHSQSRFEQPQRAPRPMDETTSDSEEHKPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGY
PPSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRASDQPTSAATETAGKPAASYVPLVGRIAAGGPILA
EESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPH
NAAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 798 bp        

>NTDB_id=723009 PV796_RS11460 WP_274912848.1 2752291..2753088(+) (dinR/lexA) [Streptomyces sp. WZ-12]
GTGACCACTACCGCAGACAGCGCGACCATCACCGCACAAAGCCACTCCCAGAGCCGATTCGAGCAACCGCAAAGGGCACC
GCGGCCGATGGACGAGACCACGTCGGACTCCGAAGAGCACAAGCCCGCCCGCTCGTTGCCGGGTCGCCCTCCGGGTATTC
GTGCCGACAGTTCCGGGCTCACCGACCGCCAGCGCCGGGTGATCGAGGTGATCCGGGATTCGGTGCAGCGGCGCGGCTAT
CCACCGTCGATGCGGGAGATCGGCCAGGCCGTCGGGCTCTCCAGCACCTCCTCCGTCGCGCACCAACTCATGGCCCTGGA
GCGGAAGGGCTTCCTCCGGCGCGACCCGCACCGCCCGCGGGCGTACGAGGTCCGCGCCTCGGACCAGCCGACGAGCGCGG
CGACGGAGACCGCCGGCAAGCCCGCCGCGTCCTACGTCCCGCTGGTCGGCCGGATCGCGGCCGGCGGGCCGATCCTGGCC
GAGGAGTCCGTCGAGGACGTCTTCCCGCTCCCCCGTCAACTGGTCGGCGACGGCGAGCTGTTCGTGCTGAAGGTCGTCGG
CGACTCGATGATCGAGGCGGCCATCTGTGACGGCGACTGGGTCACCGTCCGCCGCCAGCCGGTCGCCGAGAACGGCGACA
TCGTCGCCGCCATGCTCGACGGGGAGGCGACCGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTGCTGCCGCAC
AACGCCGCGTACCAGCCCATCCCCGGCGACGAGGCGACCATCCTCGGCAAGGTGGTCGCGGTGCTGCGCCGGGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(58-121)

Peptidase S24-like (Peptidase_S24)

(147-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80

0.37