Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   M5T46_RS15645 Genome accession   NZ_CP103479
Coordinates   3236172..3236801 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 4621     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3231172..3241801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5T46_RS15630 (M5T46_15630) helD 3231414..3233468 (-) 2055 WP_001445749.1 DNA helicase IV -
  M5T46_RS15635 (M5T46_15635) yccF 3233591..3234037 (+) 447 WP_001261235.1 YccF domain-containing protein -
  M5T46_RS15640 (M5T46_15640) yccS 3234047..3236209 (+) 2163 WP_000875041.1 YccS family putative transporter -
  M5T46_RS15645 (M5T46_15645) sxy/tfoX 3236172..3236801 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  M5T46_RS15650 (M5T46_15650) sulA 3237020..3237529 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  M5T46_RS15655 (M5T46_15655) ompA 3237886..3238938 (+) 1053 WP_000750418.1 porin OmpA -
  M5T46_RS15660 (M5T46_15660) matP 3239013..3239465 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  M5T46_RS15665 (M5T46_15665) ycbZ 3239651..3241411 (+) 1761 WP_000156476.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=722996 M5T46_RS15645 WP_000839153.1 3236172..3236801(-) (sxy/tfoX) [Escherichia coli strain 4621]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=722996 M5T46_RS15645 WP_000839153.1 3236172..3236801(-) (sxy/tfoX) [Escherichia coli strain 4621]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1