Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   M5S50_RS15290 Genome accession   NZ_CP103468
Coordinates   3173075..3173704 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 4973     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3168075..3178704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5S50_RS15275 (M5S50_15270) helD 3168317..3170371 (-) 2055 WP_038431999.1 DNA helicase IV -
  M5S50_RS15280 (M5S50_15275) yccF 3170494..3170940 (+) 447 WP_001261235.1 YccF domain-containing protein -
  M5S50_RS15285 (M5S50_15280) yccS 3170950..3173112 (+) 2163 WP_072258314.1 YccS family putative transporter -
  M5S50_RS15290 (M5S50_15285) sxy/tfoX 3173075..3173704 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  M5S50_RS15295 (M5S50_15290) sulA 3173923..3174432 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  M5S50_RS15300 (M5S50_15295) ompA 3174789..3175829 (+) 1041 WP_022645481.1 porin OmpA -
  M5S50_RS15305 (M5S50_15300) matP 3175906..3176358 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  M5S50_RS15310 (M5S50_15305) ycbZ 3176544..3178304 (+) 1761 WP_000156473.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=722974 M5S50_RS15290 WP_000839153.1 3173075..3173704(-) (sxy/tfoX) [Escherichia coli strain 4973]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=722974 M5S50_RS15290 WP_000839153.1 3173075..3173704(-) (sxy/tfoX) [Escherichia coli strain 4973]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1