Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NX050_RS21805 Genome accession   NZ_CP103456
Coordinates   4075895..4076185 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain PN176 (HK176)     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4070895..4081185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX050_RS21790 (NX050_21790) yabE 4071090..4072403 (-) 1314 WP_003226754.1 ubiquitin-like domain-containing protein -
  NX050_RS21795 (NX050_21795) dayD 4072559..4073326 (-) 768 WP_014478595.1 TatD family hydrolase -
  NX050_RS21800 (NX050_21800) metG 4073406..4075400 (-) 1995 WP_014478594.1 methionine--tRNA ligase -
  NX050_RS21805 (NX050_21805) abrB 4075895..4076185 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  NX050_RS21810 (NX050_21810) rsmI 4076234..4077112 (-) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NX050_RS21815 (NX050_21815) yazA 4077087..4077386 (-) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  NX050_RS21820 (NX050_21820) trmNF 4077373..4078116 (-) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NX050_RS21825 (NX050_21825) yabA 4078175..4078534 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  NX050_RS21830 (NX050_21830) ricT 4078549..4079376 (-) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  NX050_RS21835 (NX050_21835) holB 4079379..4080368 (-) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  NX050_RS21840 (NX050_21840) yaaR 4080380..4080820 (-) 441 WP_009966249.1 YaaR family protein -
  NX050_RS21845 (NX050_21845) darA 4080833..4081162 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=722920 NX050_RS21805 WP_003226760.1 4075895..4076185(+) (abrB) [Bacillus subtilis strain PN176 (HK176)]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=722920 NX050_RS21805 WP_003226760.1 4075895..4076185(+) (abrB) [Bacillus subtilis strain PN176 (HK176)]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1