Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NX050_RS16220 Genome accession   NZ_CP103456
Coordinates   3002947..3003525 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain PN176 (HK176)     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2997947..3008525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX050_RS16185 (NX050_16185) lepB 2997954..2998460 (-) 507 WP_003233128.1 signal peptidase I -
  NX050_RS16190 (NX050_16190) yhjE 2998462..2999085 (-) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  NX050_RS16195 (NX050_16195) - 2999237..2999608 (+) 372 WP_014476361.1 hypothetical protein -
  NX050_RS16200 (NX050_16200) yhjC 2999807..3000007 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  NX050_RS16205 (NX050_16205) yhjB 3000004..3001473 (+) 1470 WP_014479374.1 sodium:solute symporter -
  NX050_RS16210 (NX050_16210) yhjA 3001517..3001786 (-) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  NX050_RS16215 (NX050_16215) yhxD 3002003..3002902 (+) 900 WP_014479372.1 SDR family oxidoreductase -
  NX050_RS16220 (NX050_16220) comK 3002947..3003525 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  NX050_RS16225 (NX050_16225) yhzC 3003818..3004051 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  NX050_RS16230 (NX050_16230) yhxC 3004079..3004936 (-) 858 WP_014479371.1 SDR family oxidoreductase -
  NX050_RS16235 (NX050_16235) comW 3005040..3006568 (+) 1529 Protein_3208 FAD-dependent oxidoreductase -
  NX050_RS22600 hemAT 3006824..3007201 (+) 378 Protein_3209 heme-based aerotactic transducer HemAT -
  NX050_RS22605 - 3007208..3008005 (+) 798 WP_396125290.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=722905 NX050_RS16220 WP_003245329.1 3002947..3003525(-) (comK) [Bacillus subtilis strain PN176 (HK176)]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=722905 NX050_RS16220 WP_003245329.1 3002947..3003525(-) (comK) [Bacillus subtilis strain PN176 (HK176)]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1