Detailed information NTG0722902

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OP485_RS07085
• Genome accession: NZ_CP118566
• Coordinates: 1506215..1507219 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PA_HN005
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1501215..1512219

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OP485_RS07055 (OP485_07060)	fghA	1501307..1502158 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
OP485_RS07060 (OP485_07065)	ispF	1502229..1502702 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OP485_RS07065 (OP485_07070)	truD	1502699..1503766 (+)	1068	WP_004351368.1	tRNA pseudouridine(13) synthase TruD	-
OP485_RS07070 (OP485_07075)	surE	1503754..1504503 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
OP485_RS07075 (OP485_07080)	-	1504536..1505171 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OP485_RS07080 (OP485_07085)	-	1505217..1506110 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
OP485_RS07085 (OP485_07090)	rpoS	1506215..1507219 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
OP485_RS07090 (OP485_07095)	fdxA	1507646..1507969 (-)	324	WP_003119354.1	ferredoxin FdxA	-
OP485_RS07095 (OP485_07100)	mutS	1508036..1510603 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
OP485_RS07100 (OP485_07105)	-	1510729..1511736 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=722902 OP485_RS07085 WP_003113871.1 1506215..1507219(+) (rpoS) [Pseudomonas aeruginosa strain PA_HN005]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=722902 OP485_RS07085 WP_003113871.1 1506215..1507219(+) (rpoS) [Pseudomonas aeruginosa strain PA_HN005]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653