Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NX050_RS13955 Genome accession   NZ_CP103456
Coordinates   2595147..2595425 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain PN176 (HK176)     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2590147..2600425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX050_RS13935 (NX050_13935) ade 2590209..2591942 (-) 1734 WP_014479688.1 adenine deaminase -
  NX050_RS13940 (NX050_13940) ktrC 2592097..2592762 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  NX050_RS13945 (NX050_13945) ykqA 2592825..2593658 (-) 834 WP_014479687.1 gamma-glutamylcyclotransferase -
  NX050_RS13950 (NX050_13950) kinC 2593674..2594957 (-) 1284 WP_014479686.1 two-component sensor histidine kinase KinC -
  NX050_RS13955 (NX050_13955) abrB 2595147..2595425 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  NX050_RS13960 (NX050_13960) mreBH 2595709..2596716 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  NX050_RS13965 (NX050_13965) ykpC 2596817..2596951 (+) 135 WP_003238865.1 protein YkpC -
  NX050_RS13970 (NX050_13970) ampS 2597060..2598292 (+) 1233 WP_003232341.1 aminopeptidase -
  NX050_RS13975 (NX050_13975) panEB 2598326..2599237 (-) 912 WP_014479685.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=722891 NX050_RS13955 WP_003244728.1 2595147..2595425(-) (abrB) [Bacillus subtilis strain PN176 (HK176)]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=722891 NX050_RS13955 WP_003244728.1 2595147..2595425(-) (abrB) [Bacillus subtilis strain PN176 (HK176)]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576