Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   OP485_RS02060 Genome accession   NZ_CP118566
Coordinates   438308..438673 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain PA_HN005     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 433308..443673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OP485_RS02030 (OP485_02030) pyrR 433930..434442 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  OP485_RS02035 (OP485_02035) ruvX 434554..434988 (-) 435 WP_096314575.1 Holliday junction resolvase RuvX -
  OP485_RS02040 (OP485_02040) - 434988..435557 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  OP485_RS02045 (OP485_02045) - 435606..436499 (-) 894 WP_023518289.1 energy transducer TonB -
  OP485_RS02050 (OP485_02050) gshB 436646..437599 (-) 954 WP_023518290.1 glutathione synthase -
  OP485_RS02055 (OP485_02055) pilG 437854..438261 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  OP485_RS02060 (OP485_02060) pilH 438308..438673 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  OP485_RS02065 (OP485_02065) - 438724..439260 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  OP485_RS02070 (OP485_02070) pilJ 439345..441393 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  OP485_RS02075 (OP485_02075) pilK 441454..442329 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=722891 OP485_RS02060 WP_003084587.1 438308..438673(+) (pilH) [Pseudomonas aeruginosa strain PA_HN005]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=722891 OP485_RS02060 WP_003084587.1 438308..438673(+) (pilH) [Pseudomonas aeruginosa strain PA_HN005]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364